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| author | Ben Woodcroft <donttrustben@gmail.com> | 2015-11-21 10:37:34 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2016-01-14 08:00:10 +1000 |
| commit | 6b6f7d6a0e809c09a0cae47bfe41f2d35f6cf75b (patch) | |
| tree | 1f3db392f1224a5ef15cbcaf95377e439a059a89 /gnu/packages/bioinformatics.scm | |
| parent | 3d84a99e73fdc1f7523d33c27a4329ec43b6dbc9 (diff) | |
gnu: orfm: Update to 0.5.3.
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3.
[native-inputs]: Add inputs required for tests.
[description]: Add commas.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 10 |
1 files changed, 7 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c6531d669f..a0b7864918 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2079,7 +2079,7 @@ that a read originated from a particular isoform.") (define-public orfm (package (name "orfm") - (version "0.4.1") + (version "0.5.3") (source (origin (method url-fetch) (uri (string-append @@ -2087,12 +2087,16 @@ that a read originated from a particular isoform.") version "/orfm-" version ".tar.gz")) (sha256 (base32 - "05fmw145snk646ly076zby0fjav0k7ysbclck5d4s9pmgcfpijc2")))) + "0vb6d771gl4mix8bwx919x5ayy9pkj44n7ki336nz3rz2rx4c7gk")))) (build-system gnu-build-system) (inputs `(("zlib" ,zlib))) + (native-inputs + `(("ruby-bio-commandeer" ,ruby-bio-commandeer) + ("ruby-rspec" ,ruby-rspec) + ("ruby" ,ruby))) (synopsis "Simple and not slow open reading frame (ORF) caller") (description - "An ORF caller finds stretches of DNA that when translated are not + "An ORF caller finds stretches of DNA that, when translated, are not interrupted by stop codons. OrfM finds and prints these ORFs.") (home-page "https://github.com/wwood/OrfM") (license license:lgpl3+))) |