diff options
| author | Hartmut Goebel <h.goebel@crazy-compilers.com> | 2016-04-16 10:51:23 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-04-19 16:55:03 +0200 |
| commit | 1ad15c1669df7dad5bc234fb4f572e341bc04561 (patch) | |
| tree | 07f97a7ba7c85414b20fa8e01c50eb0414589e29 /gnu/packages/bioinformatics.scm | |
| parent | e1c963bf0d31a4b9813844ebdcd10c9213022bd0 (diff) | |
gnu: Rename Java packages to match new naming specification.
* gnu/packages/bioinformatics.scm (htsjdk): Rename to...
(java-htsjdk): ...this.
(ngs-java): Rename to...
(java-ngs): ...this.
(ncbi-vdb)[arguments,inputs]: Use new name.
* gnu/packages/java.scm (swt): Rename to...
(java-swt): ...this.
* gnu/packages/music.scm (tuxguitar)[make-flags,inputs,arguments]: Use
new name of package "swt".
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 082cdf8eba..c49b0a9e17 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2144,9 +2144,9 @@ HMMs).") from high-throughput sequencing assays.") (license license:gpl3+))) -(define-public htsjdk +(define-public java-htsjdk (package - (name "htsjdk") + (name "java-htsjdk") (version "1.129") (source (origin (method url-fetch) @@ -3081,9 +3081,9 @@ any particular back-end implementation, and supports use of multiple back-ends simultaneously.") (license license:public-domain))) -(define-public ngs-java +(define-public java-ngs (package (inherit ngs-sdk) - (name "ngs-java") + (name "java-ngs") (arguments `(,@(substitute-keyword-arguments `(#:modules ((guix build gnu-build-system) @@ -3146,7 +3146,7 @@ simultaneously.") (string-append "--with-ngs-sdk-prefix=" (assoc-ref inputs "ngs-sdk")) (string-append "--with-ngs-java-prefix=" - (assoc-ref inputs "ngs-java")) + (assoc-ref inputs "java-ngs")) (string-append "--with-hdf5-prefix=" (assoc-ref inputs "hdf5")))))) (alist-cons-after @@ -3172,7 +3172,7 @@ simultaneously.") (inputs `(("libxml2" ,libxml2) ("ngs-sdk" ,ngs-sdk) - ("ngs-java" ,ngs-java) + ("java-ngs" ,java-ngs) ("libmagic" ,file) ("hdf5" ,hdf5))) (native-inputs `(("perl" ,perl))) |