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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-12-18 12:07:56 +0100
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-12-21 17:22:16 +0100
commitbf7764b74f6052bbb977b869efdcfbb8b6e9e588 (patch)
tree4c7ba9022948389ba7ecec49118b9180155e4f69 /gnu/packages/bioinformatics.scm
parent78addcb0ebce8a387be6ec43192cce7490cba794 (diff)
gnu: Add GenomeInfoDb.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cbc83dd391..f4679cf9d4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3245,6 +3245,33 @@ naming and share the same rich and consistent \"Vector API\" as much as
possible.")
(license license:artistic2.0)))
+(define-public r-genomeinfodb
+ (package
+ (name "r-genomeinfodb")
+ (version "1.6.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomeInfoDb" version))
+ (sha256
+ (base32
+ "1j2n1v1mrw1fxn7cyffz112pm76wd6gy9q9qwlsfv3brbsqbvdbf"))))
+ (properties
+ `((upstream-name . "GenomeInfoDb")
+ (r-repository . bioconductor)))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "http://bioconductor.org/packages/GenomeInfoDb")
+ (synopsis "Utilities for manipulating chromosome identifiers")
+ (description
+ "This package contains data and functions that define and allow
+translation between different chromosome sequence naming conventions (e.g.,
+\"chr1\" versus \"1\"), including a function that attempts to place sequence
+names in their natural, rather than lexicographic, order.")
+ (license license:artistic2.0)))
+
(define-public r-qtl
(package
(name "r-qtl")