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authorRicardo Wurmus <rekado@elephly.net>2017-03-17 09:42:22 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-03-17 10:14:02 +0100
commit2d7c4ae3ee83841ef827a160b0d23c1d10d2570d (patch)
tree6d1974e1e975b231c6e78ac00129cf3301e7df85 /gnu/packages/bioinformatics.scm
parentf1fe5283c9f8eb6890b3e6dc3c09a00f4da19472 (diff)
gnu: r: Rename to r-minimal.
* gnu/packages/statistics.scm (r): Rename to... (r-minimal): ...this new variable. (r-with-recommended-packages): Rename to... (r): ...this. * guix/build-system/r.scm (default-r): Reference r-minimal. * gnu/packages/emacs.scm (emacs-ess)[inputs], gnu/packages/machine-learning.scm (shogun)[inputs], gnu/packages/python.scm (python-rpy2)[inputs], gnu/packages/bioinformatics.scm (ribotaper)[inputs], (couger)[propagated-inputs], (roary)[inputs], (rsem)[inputs], (rcas-web)[inputs]: Change "r" to "r-minimal".
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm10
1 files changed, 5 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bd3c97b721..ccde01b119 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -478,7 +478,7 @@ BED, GFF/GTF, VCF.")
(inputs
`(("bedtools" ,bedtools-2.18)
("samtools" ,samtools-0.1)
- ("r" ,r)
+ ("r-minimal" ,r-minimal)
("r-foreach" ,r-foreach)
("r-xnomial" ,r-xnomial)
("r-domc" ,r-domc)
@@ -1728,7 +1728,7 @@ gene predictor designed to work with assembled, aligned RNA-seq transcripts.")
("python2-scipy" ,python2-scipy)
("python2-matplotlib" ,python2-matplotlib)))
(propagated-inputs
- `(("r" ,r)
+ `(("r-minimal" ,r-minimal)
("libsvm" ,libsvm)
("randomjungle" ,randomjungle)))
(native-inputs
@@ -4004,7 +4004,7 @@ partial genes, and identifies translation initiation sites.")
("grep" ,grep)
("sed" ,sed)
("gawk" ,gawk)
- ("r" ,r)
+ ("r-minimal" ,r-minimal)
("r-ggplot2" ,r-ggplot2)
("coreutils" ,coreutils)))
(home-page "http://sanger-pathogens.github.io/Roary")
@@ -4119,7 +4119,7 @@ phylogenies.")
(inputs
`(("boost" ,boost)
("ncurses" ,ncurses)
- ("r" ,r)
+ ("r-minimal" ,r-minimal)
("perl" ,perl)
("samtools" ,samtools-0.1)
("zlib" ,zlib)))
@@ -7636,7 +7636,7 @@ library implementing most of the pipeline's features.")
`("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))))
#t)))))
(inputs
- `(("r" ,r)
+ `(("r-minimal" ,r-minimal)
("r-rcas" ,r-rcas)
("guile-next" ,guile-next)
("guile-json" ,guile2.2-json)