diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2022-12-13 15:12:14 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-12-13 16:31:54 +0100 |
| commit | 4f1a36bd7b8febbcabbed76cdb9534e279445bd0 (patch) | |
| tree | 48656a2cad128c580fac43ecf9ed03669b3974b2 /gnu/packages/bioinformatics.scm | |
| parent | 8cc22866c283f49c14f7b7419f57c40c8eee1f56 (diff) | |
gnu: bamutils: Update to 1.0.15.
* gnu/packages/bioinformatics.scm (bamutils): Update to 1.0.15.
[arguments]: Remove quasiquoting; remove USER_WARNINGS from make-flags.
[native-inputs]: Update libstatgen.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 16 insertions, 15 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0f3d8010af..5291056dc8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -242,7 +242,7 @@ BAM files.") (define-public bamutils (package (name "bamutils") - (version "1.0.14") + (version "1.0.15") (source (origin (method git-fetch) (uri (git-reference @@ -251,21 +251,22 @@ BAM files.") (file-name (git-file-name name version)) (sha256 (base32 - "0i2r332k1kz0jysyg89d858wqq59n16lw6dv5qmilcwshb77r9v7")))) + "1pxydf9qsr8667jh525bc2wiqn9nwk8rkg05kbyfmjs8d261fl9y")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; Unclear how to run tests - #:make-flags - ,#~(list "USER_WARNINGS=-std=gnu++98" ; - (string-append "INSTALLDIR=" #$output "/bin")) - #:phases - (modify-phases %standard-phases - (replace 'configure - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "src/Makefile" ; - (("^DATE=.*") "DATE=\"1970-01-01\"\n")) - (copy-recursively (assoc-ref inputs "libstatgen") - "../libStatGen")))))) + (list + #:tests? #f ;fails to link debug libraries + #:test-target "test" + #:make-flags + #~(list (string-append "INSTALLDIR=" #$output "/bin")) + #:phases + #~(modify-phases %standard-phases + (replace 'configure + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "src/Makefile" + (("^DATE=.*") "DATE=\"1970-01-01\"\n")) + (copy-recursively (assoc-ref inputs "libstatgen") + "../libStatGen")))))) (inputs (list zlib)) (native-inputs @@ -278,7 +279,7 @@ BAM files.") (file-name (git-file-name "libstatgen" version)) (sha256 (base32 - "0q9iyk046r4m7qnav8c3f28zsar25lj9nydiklwaswmzdijhi4p1")))))) + "0spvbpvnpxrgj8kajpkhf1mv7kdyvj723y9zh13jykvnjh8a15j3")))))) (home-page "https://genome.sph.umich.edu/wiki/BamUtil") (synopsis "Programs for working on SAM/BAM files") (description "This package provides several programs that perform |