diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2022-12-13 15:26:11 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-12-13 16:31:55 +0100 |
| commit | 684d046e6c6198d7fadd2632ae9ca9ecfe7c3278 (patch) | |
| tree | 8836b61d1b8dbd07338bfe11aa7d956c127f8ab1 /gnu/packages/bioinformatics.scm | |
| parent | 53f65f7315c3f37d670a6164e72cf0c96cab6c2e (diff) | |
gnu: pbcopper: Update to 2.0.0.
* gnu/packages/bioinformatics.scm (pbcopper): Update to 2.0.0.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 61 |
1 files changed, 29 insertions, 32 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1ead24dff1..039487ea80 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -496,39 +496,36 @@ BED, GFF/GTF, VCF.") (list samtools zlib)))) (define-public pbcopper - ;; This is the latest commit at the time of this writing. - (let ((commit "ad4143afd25a0bd6adc977c544865c992a515841") - (revision "1")) - (package - (name "pbcopper") - (version (git-version "1.9.0" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/PacificBiosciences/pbcopper") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1qxkbpdkamfisnk36lpi1vdvf3p1lg2hdqna3xgd94pz52bwbmp7")))) - (build-system meson-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'patch-meson-files - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "meson.build" - (("-msse4.1") ""))))))) - (inputs - (list boost)) - (native-inputs - (list googletest pkg-config)) - (home-page "https://github.com/PacificBiosciences/pbcopper") - (synopsis "Data structures, algorithms, and utilities for PacBio C++ applications") - (description - "The pbcopper library provides a suite of data structures, algorithms, + (package + (name "pbcopper") + (version "2.0.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/PacificBiosciences/pbcopper") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "04mgmla96bsmr9gijbn3ibspry625cv4kqqxv70z4jq4qc407jy3")))) + (build-system meson-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-meson-files + (lambda _ + (substitute* "meson.build" + (("-msse4.1") ""))))))) + (inputs + (list boost)) + (native-inputs + (list googletest pkg-config)) + (home-page "https://github.com/PacificBiosciences/pbcopper") + (synopsis "Data structures, algorithms, and utilities for PacBio C++ applications") + (description + "The pbcopper library provides a suite of data structures, algorithms, and utilities for PacBio C++ applications.") - (license license:bsd-3)))) + (license license:bsd-3))) (define-public r-btools (let ((commit "fa21d4ca01d37ea4d98b45582453f3bf95cbc2b5") |