diff options
| author | Afkhami, Navid <Navid.Afkhami@mdc-berlin.de> | 2023-11-03 13:05:29 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-11-03 14:10:13 +0100 |
| commit | c9361460dece1dbc3d2645ad3e5c79e85a2bf183 (patch) | |
| tree | 320adc53f364ed37e9d380426cc93b0229471123 /gnu/packages/bioinformatics.scm | |
| parent | 6ae8fd7aa7a843ea831b24b74c9d3f7ea3ff49a9 (diff) | |
gnu: Add r-miamiplot.
* gnu/packages/bioinformatics.scm (r-miamiplot): New variable.
Change-Id: I41a3a951c6f1835800301e4c168eeeb0dd299f06
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3a4bcd093a..baa990970c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10665,6 +10665,40 @@ of transcriptional heterogeneity among single cells.") ;; See https://github.com/hms-dbmi/scde/issues/38 (license license:gpl2))) +(define-public r-miamiplot + (let ((commit "beede9c5d6431b4d822aa42e064e01baeb5dd4a0") + (revision "1")) + (package + (name "r-miamiplot") + (version (git-version "1.1.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/juliedwhite/miamiplot") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0wxxk1lk9jbf0imf59qp302ffasvs84idinkvzirs3dw9w3589n9")))) + (properties `((upstream-name . "miamiplot"))) + (build-system r-build-system) + (propagated-inputs (list r-checkmate + r-dplyr + r-ggplot2 + r-ggrepel + r-gridextra + r-magrittr + r-rlang)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/juliedwhite/miamiplot") + (synopsis "Create a ggplot2 miami plot") + (description + "This package generates a Miami plot with centered chromosome labels. +The output is a ggplot2 object. Users can specify which data they want +plotted on top vs. bottom, whether to display significance line(s), what +colors to give chromosomes, and what points to label.") + (license license:gpl2)))) + (define-public r-millefy (package (name "r-millefy") |