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authorzimoun <zimon.toutoune@gmail.com>2021-03-08 18:58:02 +0100
committerRicardo Wurmus <rekado@elephly.net>2021-03-12 14:45:54 +0100
commit8957efa8ef940685811b9e55eb7178ecd33abb40 (patch)
tree941cb6ac2904f3a89a8cd1f67b596dcbd92e5c5c /gnu/packages/bioinformatics.scm
parent2a9705768808ff8b76bf38a7ae9445b2c756ba46 (diff)
gnu: r-shortread: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-shortread): Move from here... * gnu/packages/bioconductor.scm (r-shortread): ...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm43
1 files changed, 0 insertions, 43 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c4713fc5cf..f363d64550 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7387,49 +7387,6 @@ includes software to
")
(license license:cc0))))
-(define-public r-shortread
- (package
- (name "r-shortread")
- (version "1.48.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "ShortRead" version))
- (sha256
- (base32
- "0w4m8d3h660mmr2ymp206r1n4aqssxmkv8yxkbr5y1swrahxzfk9"))))
- (properties `((upstream-name . "ShortRead")))
- (build-system r-build-system)
- (inputs
- `(("zlib" ,zlib)))
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-biocparallel" ,r-biocparallel)
- ("r-biostrings" ,r-biostrings)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicalignments" ,r-genomicalignments)
- ("r-genomicranges" ,r-genomicranges)
- ("r-rhtslib" ,r-rhtslib)
- ("r-hwriter" ,r-hwriter)
- ("r-iranges" ,r-iranges)
- ("r-lattice" ,r-lattice)
- ("r-latticeextra" ,r-latticeextra)
- ("r-rsamtools" ,r-rsamtools)
- ("r-s4vectors" ,r-s4vectors)
- ("r-xvector" ,r-xvector)
- ("r-zlibbioc" ,r-zlibbioc)))
- (home-page "https://bioconductor.org/packages/ShortRead")
- (synopsis "FASTQ input and manipulation tools")
- (description
- "This package implements sampling, iteration, and input of FASTQ files.
-It includes functions for filtering and trimming reads, and for generating a
-quality assessment report. Data are represented as
-@code{DNAStringSet}-derived objects, and easily manipulated for a diversity of
-purposes. The package also contains legacy support for early single-end,
-ungapped alignment formats.")
- (license license:artistic2.0)))
-
(define-public r-systempiper
(package
(name "r-systempiper")