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authorzimoun <zimon.toutoune@gmail.com>2021-03-08 18:58:28 +0100
committerRicardo Wurmus <rekado@elephly.net>2021-03-12 14:45:55 +0100
commitdf6b3c25bbaabd5153c2472a5082c24934e16492 (patch)
treeff2cbeabfaecb219f7d525ad0eb3c6bf32130837 /gnu/packages/bioinformatics.scm
parent8957efa8ef940685811b9e55eb7178ecd33abb40 (diff)
gnu: r-systempiper: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-systempiper): Move from here... * gnu/packages/bioconductor.scm (r-systempiper): ...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm54
1 files changed, 0 insertions, 54 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f363d64550..b2d10457fe 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7387,60 +7387,6 @@ includes software to
")
(license license:cc0))))
-(define-public r-systempiper
- (package
- (name "r-systempiper")
- (version "1.24.3")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "systemPipeR" version))
- (sha256
- (base32
- "0ffazyl2q9plbhwlxi04s3fvnli6qj95n7bkjc21535bbi08xfki"))))
- (properties `((upstream-name . "systemPipeR")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotate" ,r-annotate)
- ("r-assertthat" ,r-assertthat)
- ("r-batchtools" ,r-batchtools)
- ("r-biostrings" ,r-biostrings)
- ("r-deseq2" ,r-deseq2)
- ("r-dot" ,r-dot)
- ("r-edger" ,r-edger)
- ("r-genomicfeatures" ,r-genomicfeatures)
- ("r-genomicranges" ,r-genomicranges)
- ("r-ggplot2" ,r-ggplot2)
- ("r-go-db" ,r-go-db)
- ("r-gostats" ,r-gostats)
- ("r-iranges" ,r-iranges)
- ("r-limma" ,r-limma)
- ("r-magrittr" ,r-magrittr)
- ("r-pheatmap" ,r-pheatmap)
- ("r-rjson" ,r-rjson)
- ("r-rsamtools" ,r-rsamtools)
- ("r-rsvg" ,r-rsvg)
- ("r-shortread" ,r-shortread)
- ("r-stringr" ,r-stringr)
- ("r-summarizedexperiment" ,r-summarizedexperiment)
- ("r-yaml" ,r-yaml)
- ("r-variantannotation" ,r-variantannotation)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://github.com/tgirke/systemPipeR")
- (synopsis "Next generation sequencing workflow and reporting environment")
- (description
- "This R package provides tools for building and running automated
-end-to-end analysis workflows for a wide range of @dfn{next generation
-sequence} (NGS) applications such as RNA-Seq, ChIP-Seq, VAR-Seq and Ribo-Seq.
-Important features include a uniform workflow interface across different NGS
-applications, automated report generation, and support for running both R and
-command-line software, such as NGS aligners or peak/variant callers, on local
-computers or compute clusters. Efficient handling of complex sample sets and
-experimental designs is facilitated by a consistently implemented sample
-annotation infrastructure.")
- (license license:artistic2.0)))
-
(define-public r-grohmm
(package
(name "r-grohmm")