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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2019-01-10 14:55:50 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-01-12 12:14:28 +0100
commit24155bf40db2dfd25c167f41452ea0227a712654 (patch)
tree5f2bd4b098f4bcd9e4395b3b88341698d41af738 /gnu/packages/compression.scm
parent170436771968dfa272225ea45b63689b900fd317 (diff)
gnu: Move Java compression packages to new module.
* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable. (java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz): Move these variables from here... * gnu/packages/java-compression.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module references.
Diffstat (limited to 'gnu/packages/compression.scm')
-rw-r--r--gnu/packages/compression.scm280
1 files changed, 1 insertions, 279 deletions
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index b2b4488683..029d11ef21 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -45,7 +45,6 @@
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix git-download)
- #:use-module (guix build-system ant)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (guix build-system perl)
@@ -59,7 +58,6 @@
#:use-module (gnu packages check)
#:use-module (gnu packages curl)
#:use-module (gnu packages file)
- #:use-module (gnu packages java)
#:use-module (gnu packages maths)
#:use-module (gnu packages perl)
#:use-module (gnu packages perl-check)
@@ -1265,7 +1263,7 @@ for most inputs, but the resulting compressed files are anywhere from 20% to
100% bigger.")
(license license:asl2.0)))
-(define bitshuffle-for-snappy
+(define-public bitshuffle-for-snappy
(package
(inherit bitshuffle)
(name "bitshuffle-for-snappy")
@@ -1302,245 +1300,6 @@ install: libbitshuffle.so
(inputs '())
(native-inputs '())))
-(define-public java-snappy
- (package
- (name "java-snappy")
- (version "1.1.7.2")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/xerial/snappy-java/archive/"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "1p557vdv006ysgxbpp83krmq0066k46108vyiyka69w8i4i8rbbm"))))
- (build-system ant-build-system)
- (arguments
- `(#:jar-name "snappy.jar"
- #:source-dir "src/main/java"
- #:phases
- (modify-phases %standard-phases
- (add-before 'build 'remove-binaries
- (lambda _
- (delete-file "lib/org/xerial/snappy/OSInfo.class")
- (delete-file-recursively "src/main/resources/org/xerial/snappy/native")
- #t))
- (add-before 'build 'build-jni
- (lambda _
- ;; Rebuild one of the binaries we removed earlier
- (invoke "javac" "src/main/java/org/xerial/snappy/OSInfo.java"
- "-d" "lib")
- ;; Link to the dynamic bitshuffle and snappy, not the static ones
- (substitute* "Makefile.common"
- (("-shared")
- "-shared -lbitshuffle -lsnappy"))
- (substitute* "Makefile"
- ;; Don't try to use git, don't download bitshuffle source
- ;; and don't build it.
- (("\\$\\(SNAPPY_GIT_UNPACKED\\) ")
- "")
- ((": \\$\\(SNAPPY_GIT_UNPACKED\\)")
- ":")
- (("\\$\\(BITSHUFFLE_UNPACKED\\) ")
- "")
- ((": \\$\\(SNAPPY_SOURCE_CONFIGURED\\)") ":")
- ;; What we actually want to build
- (("SNAPPY_OBJ:=.*")
- "SNAPPY_OBJ:=$(addprefix $(SNAPPY_OUT)/, \
- SnappyNative.o BitShuffleNative.o)\n")
- ;; Since we removed the directory structure in "native" during
- ;; the previous phase, we need to recreate it.
- (("NAME\\): \\$\\(SNAPPY_OBJ\\)")
- "NAME): $(SNAPPY_OBJ)\n\t@mkdir -p $(@D)"))
- ;; Finally we can run the Makefile to build the dynamic library.
- ;; Use the -nocmake target to avoid a dependency on cmake,
- ;; which in turn requires the "git_unpacked" directory.
- (invoke "make" "native-nocmake")))
- ;; Once we have built the shared library, we need to place it in the
- ;; "build" directory so it can be added to the jar file.
- (add-after 'build-jni 'copy-jni
- (lambda _
- (copy-recursively "src/main/resources/org/xerial/snappy/native"
- "build/classes/org/xerial/snappy/native")
- #t))
- (add-before 'check 'fix-failing
- (lambda _
- (with-directory-excursion "src/test/java/org/xerial/snappy"
- ;; This package assumes maven build, which puts results in "target".
- ;; We put them in "build" instead, so fix that.
- (substitute* "SnappyLoaderTest.java"
- (("target/classes") "build/classes"))
- ;; This requires Hadoop, which is not in Guix yet.
- (delete-file "SnappyHadoopCompatibleOutputStreamTest.java"))
- #t)))))
- (inputs
- `(("osgi-framework" ,java-osgi-framework)))
- (propagated-inputs
- `(("bitshuffle" ,bitshuffle-for-snappy)
- ("snappy" ,snappy)))
- (native-inputs
- `(("junit" ,java-junit)
- ("hamcrest" ,java-hamcrest-core)
- ("xerial-core" ,java-xerial-core)
- ("classworlds" ,java-plexus-classworlds)
- ("commons-lang" ,java-commons-lang)
- ("commons-io" ,java-commons-io)
- ("perl" ,perl)))
- (home-page "https://github.com/xerial/snappy-java")
- (synopsis "Compression/decompression algorithm in Java")
- (description "Snappy-java is a Java port of snappy, a fast C++
-compressor/decompressor.")
- (license license:asl2.0)))
-
-(define-public java-snappy-1
- (package
- (inherit java-snappy)
- (version "1.0.3-rc3")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/xerial/snappy-java/archive/"
- "snappy-java-" version ".tar.gz"))
- (sha256
- (base32
- "08hsxlqidiqck0q57fshwyv3ynyxy18vmhrai9fyc8mz17m7gsa3"))))
- (arguments
- `(#:jar-name "snappy.jar"
- #:source-dir "src/main/java"
- #:phases
- (modify-phases %standard-phases
- (add-before 'build 'remove-binaries
- (lambda _
- (delete-file "lib/org/xerial/snappy/OSInfo.class")
- (delete-file-recursively "src/main/resources/org/xerial/snappy/native")
- #t))
- (add-before 'build 'build-jni
- (lambda _
- ;; Rebuild one of the binaries we removed earlier
- (invoke "javac" "src/main/java/org/xerial/snappy/OSInfo.java"
- "-d" "lib")
- ;; Link to the dynamic snappy, not the static ones
- (substitute* "Makefile.common"
- (("-shared") "-shared -lsnappy"))
- (substitute* "Makefile"
- ;; Don't download the sources here.
- (("\\$\\(SNAPPY_UNPACKED\\) ") "")
- ((": \\$\\(SNAPPY_UNPACKED\\) ") ":")
- ;; What we actually want to build
- (("SNAPPY_OBJ:=.*")
- "SNAPPY_OBJ:=$(addprefix $(SNAPPY_OUT)/, SnappyNative.o)\n")
- ;; Since we removed the directory structure in "native" during
- ;; the previous phase, we need to recreate it.
- (("NAME\\): \\$\\(SNAPPY_OBJ\\)")
- "NAME): $(SNAPPY_OBJ)\n\t@mkdir -p $(@D)"))
- ;; Finally we can run the Makefile to build the dynamic library.
- (invoke "make" "native")))
- ;; Once we have built the shared library, we need to place it in the
- ;; "build" directory so it can be added to the jar file.
- (add-after 'build-jni 'copy-jni
- (lambda _
- (copy-recursively "src/main/resources/org/xerial/snappy/native"
- "build/classes/org/xerial/snappy/native")
- #t))
- (add-before 'check 'fix-tests
- (lambda _
- (mkdir-p "src/test/resources/org/xerial/snappy/")
- (copy-recursively "src/test/java/org/xerial/snappy/testdata"
- "src/test/resources/org/xerial/snappy/testdata")
- (install-file "src/test/java/org/xerial/snappy/alice29.txt"
- "src/test/resources/org/xerial/snappy/")
- #t)))))))
-
-(define-public java-iq80-snappy
- (package
- (name "java-iq80-snappy")
- (version "0.4")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/dain/snappy/archive/snappy-"
- version ".tar.gz"))
- (sha256
- (base32
- "0rb3zhci7w9wzd65lfnk7p3ip0n6gb58a9qpx8n7r0231gahyamf"))))
- (build-system ant-build-system)
- (arguments
- `(#:jar-name "iq80-snappy.jar"
- #:source-dir "src/main/java"
- #:test-dir "src/test"
- #:jdk ,icedtea-8
- #:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda _
- (define (test class)
- (invoke "java" "-cp" (string-append (getenv "CLASSPATH")
- ":build/classes"
- ":build/test-classes")
- "-Dtest.resources.dir=src/test/resources"
- "org.testng.TestNG" "-testclass"
- class))
- (invoke "ant" "compile-tests")
- (test "org.iq80.snappy.SnappyFramedStreamTest")
- (test "org.iq80.snappy.SnappyStreamTest")
- #t))
- (add-before 'build 'remove-hadoop-dependency
- (lambda _
- ;; We don't have hadoop
- (delete-file "src/main/java/org/iq80/snappy/HadoopSnappyCodec.java")
- (delete-file "src/test/java/org/iq80/snappy/TestHadoopSnappyCodec.java")
- #t)))))
- (home-page "https://github.com/dain/snappy")
- (native-inputs
- `(("guava" ,java-guava)
- ("java-snappy" ,java-snappy)
- ("hamcrest" ,java-hamcrest-core)
- ("testng" ,java-testng)))
- (synopsis "Java port of the Snappy (de)compressor")
- (description
- "Iq80-snappy is a port of the Snappy compressor and decompressor rewritten
-in pure Java. This compression code produces a byte-for-byte exact copy of the
-output created by the original C++ code, and is extremely fast.")
- (license license:asl2.0)))
-
-(define-public java-jbzip2
- (package
- (name "java-jbzip2")
- (version "0.9.1")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://storage.googleapis.com/"
- "google-code-archive-source/v2/"
- "code.google.com/jbzip2/"
- "source-archive.zip"))
- (file-name (string-append name "-" version ".zip"))
- (sha256
- (base32
- "0ncmhlqmrfmj96nqf6p77b9ws35lcfsvpfxzwxi2asissc83z1l3"))))
- (build-system ant-build-system)
- (native-inputs
- `(("unzip" ,unzip)
- ("java-junit" ,java-junit)))
- (arguments
- `(#:tests? #f ; no tests
- #:jar-name "jbzip2.jar"
- #:source-dir "tags/release-0.9.1/src"
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'fix-encoding-problems
- (lambda _
- ;; Some of the files we're patching are
- ;; ISO-8859-1-encoded, so choose it as the default
- ;; encoding so the byte encoding is preserved.
- (with-fluids ((%default-port-encoding #f))
- (substitute* "tags/release-0.9.1/src/org/itadaki/bzip2/HuffmanAllocator.java"
- (("Milidi.") "Milidiu")))
- #t)))))
- (home-page "https://code.google.com/archive/p/jbzip2/")
- (synopsis "Java bzip2 compression/decompression library")
- (description "Jbzip2 is a Java bzip2 compression/decompression library.
-It can be used as a replacement for the Apache @code{CBZip2InputStream} /
-@code{CBZip2OutputStream} classes.")
- (license license:expat)))
-
(define-public p7zip
(package
(name "p7zip")
@@ -2099,43 +1858,6 @@ without having to worry how it does so, or use different interfaces for each
type by using either Perl modules, or command-line tools on your system.")
(license license:perl-license)))
-(define-public java-tukaani-xz
- (package
- (name "java-tukaani-xz")
- (version "1.6")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://tukaani.org/xz/xz-java-" version ".zip"))
- (sha256
- (base32
- "1z3p1ri1gvl07inxn0agx44ck8n7wrzfmvkz8nbq3njn8r9wba8x"))))
- (build-system ant-build-system)
- (arguments
- `(#:tests? #f; no tests
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'chdir
- (lambda _
- ;; Our build system enters the first directory in the archive, but
- ;; the package is not contained in a subdirectory
- (chdir "..")
- #t))
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- ;; Do we want to install *Demo.jar?
- (install-file "build/jar/xz.jar"
- (string-append
- (assoc-ref outputs "out")
- "/share/java/xz.jar"))
- #t)))))
- (native-inputs
- `(("unzip" ,unzip)))
- (home-page "https://tukaani.org")
- (synopsis "XZ in Java")
- (description "Tukaani-xz is an implementation of xz compression/decompression
-algorithms in Java.")
- (license license:public-domain)))
-
(define-public lunzip
(package
(name "lunzip")