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authorPierre Langlois <pierre.langlois@gmx.com>2020-06-18 00:59:09 +0200
committerLudovic Courtès <ludo@gnu.org>2020-06-22 15:44:16 +0200
commit6e31d6f3c478144de1ad185dc7341d5513f464c0 (patch)
tree5570f90197142b9027a4c6b3a8c2e30b5d6e3730 /gnu/packages/graph.scm
parent3417a25156946d5cf69dafa283664a09067d9645 (diff)
gnu: python-plotly: Update to 4.8.1.
But keep version 2.4.1 around for packages that still need it and for python2 support. * gnu/packages/graph.scm (python-plotly): Update to 4.8.1. [source]: Use git-fetch so that tests are also included. [arguments]: Enable tests. [home-page]: Follow redirect. (python-plotly-2.4.1): New variable. (python2-plotly): Inherit from python-plotly-2.4.1. * gnu/packages/bioinformatics.scm (python-deeptools)[native-inputs]: Depend on python-plotly-2.4.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Diffstat (limited to 'gnu/packages/graph.scm')
-rw-r--r--gnu/packages/graph.scm74
1 files changed, 60 insertions, 14 deletions
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index dc8f2c64a2..762ee30632 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -5,6 +5,7 @@
;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2019 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2020 Alexander Krotov <krotov@iitp.ru>
+;;; Copyright © 2020 Pierre Langlois <pierre.langlos@gmx.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -235,25 +236,49 @@ lines.")
(define-public python-plotly
(package
(name "python-plotly")
- (version "2.4.1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "plotly" version))
- (sha256
- (base32
- "0s9gk2fl53x8wwncs3fwii1vzfngr0sskv15v3mpshqmrqfrk27m"))))
+ (version "4.8.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/plotly/plotly.py.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "08ab677gr85m10zhixr6dnmlfws8q6sra7nhyb8nf3r8dx1ffqhz"))))
(build-system python-build-system)
(arguments
- '(#:tests? #f)) ; The tests are not distributed in the release
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _
+ (chdir "packages/python/plotly")
+ #t))
+ (replace 'check
+ (lambda _
+ (invoke "pytest" "-x" "plotly/tests/test_core")
+ (invoke "pytest" "-x" "plotly/tests/test_io")
+ ;; FIXME: Add optional dependencies and enable their tests.
+ ;; (invoke "pytest" "-x" "plotly/tests/test_optional")
+ (invoke "pytest" "_plotly_utils/tests")))
+ (add-before 'reset-gzip-timestamps 'make-files-writable
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (for-each (lambda (file) (chmod file #o644))
+ (find-files out "\\.gz"))
+ #t))))))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)))
(propagated-inputs
`(("python-decorator" ,python-decorator)
- ("python-nbformat" ,python-nbformat)
+ ("python-ipywidgets" ,python-ipywidgets)
("python-pandas" ,python-pandas)
- ("python-pytz" ,python-pytz)
("python-requests" ,python-requests)
- ("python-six" ,python-six)))
- (home-page "https://plot.ly/python/")
+ ("python-retrying" ,python-retrying)
+ ("python-six" ,python-six)
+ ("python-statsmodels" ,python-statsmodels)
+ ("python-xarray" ,python-xarray)))
+ (home-page "https://plotly.com/python/")
(synopsis "Interactive plotting library for Python")
(description "Plotly's Python graphing library makes interactive,
publication-quality graphs online. Examples of how to make line plots, scatter
@@ -261,8 +286,29 @@ plots, area charts, bar charts, error bars, box plots, histograms, heatmaps,
subplots, multiple-axes, polar charts, and bubble charts. ")
(license license:expat)))
+(define-public python-plotly-2.4.1
+ (package (inherit python-plotly)
+ (version "2.4.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "plotly" version))
+ (sha256
+ (base32
+ "0s9gk2fl53x8wwncs3fwii1vzfngr0sskv15v3mpshqmrqfrk27m"))))
+ (native-inputs '())
+ (propagated-inputs
+ `(("python-decorator" ,python-decorator)
+ ("python-nbformat" ,python-nbformat)
+ ("python-pandas" ,python-pandas)
+ ("python-pytz" ,python-pytz)
+ ("python-requests" ,python-requests)
+ ("python-six" ,python-six)))
+ (arguments
+ '(#:tests? #f)))) ; The tests are not distributed in the release
+
(define-public python2-plotly
- (package-with-python2 python-plotly))
+ (package-with-python2 python-plotly-2.4.1))
(define-public python-louvain
(package