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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-01-08 16:22:52 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-16 12:44:35 +0100 |
| commit | fa5d8c839aa569b59ea38b4d825f807d21b26a44 (patch) | |
| tree | 1921483bf37a6faf61c106f1a9334c2a1849711e /gnu/packages/machine-learning.scm | |
| parent | ca1749c243f7ac81adb31c0589f87367eb4021dd (diff) | |
gnu: python-umap-learn: Update to 0.5.5.
* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.5.
[build-system]: Use pyproject-build-system.
[arguments]: Remove 'numpy-compatibility and custom 'check phases.
Change-Id: I2123f66519730d43e454d9536e8cb7b6c4569d56
Diffstat (limited to 'gnu/packages/machine-learning.scm')
| -rw-r--r-- | gnu/packages/machine-learning.scm | 30 |
1 files changed, 5 insertions, 25 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 95d057662d..f3929db806 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -3787,46 +3787,26 @@ methodxs at scale on CPU or GPU.") (define-public python-umap-learn (package (name "python-umap-learn") - (version "0.5.3") + (version "0.5.5") (source (origin (method git-fetch) ;no tests in pypi release (uri (git-reference (url "https://github.com/lmcinnes/umap") - (commit version))) + (commit (string-append "release-" version)))) (file-name (git-file-name name version)) (sha256 (base32 - "1315jkb0h1b579y9m59632f0nnpksilm01nxx46in0rq8zna8vsb")))) - (build-system python-build-system) + "0ijyiaqycynwj1383cxp519c765gjbg1f6fjwbvqj1gims710w3d")))) + (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases - (add-after 'unpack 'numpy-compatibility - (lambda _ - (substitute* "umap/tests/test_umap_metrics.py" - ;; See commit a714b59bd9e2ca2e63312bc3491b2b037a42f2f2 - (("sparse_binary_data.todense\\(\\),") - "np.asarray(sparse_binary_data.todense()),") - ;; See commit c7d05683325589ad432a55e109cacb9d631cfaa9 - (("sparse_spatial_data.todense\\(\\),") - "np.asarray(sparse_spatial_data.todense()),")) - ;; See commit 949abd082524fce8c45dfb147bcd8e8ef49eade3 - (substitute* "umap/tests/test_umap_ops.py" - (("np.random,") "None,")))) ;; Numba needs a writable dir to cache functions. (add-before 'check 'set-numba-cache-dir (lambda _ - (setenv "NUMBA_CACHE_DIR" "/tmp"))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (setenv "HOME" "/tmp") - (invoke "pytest" "-vv" "umap" - ;; This test can fail because trust may only be - ;; 0.9679405204460967 >= 0.97 - "-k" "not test_densmap_trustworthiness_on_iris_supervised"))))))) + (setenv "NUMBA_CACHE_DIR" "/tmp")))))) (native-inputs (list python-pytest)) (propagated-inputs (list python-numba |