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authorLudovic Courtès <ludo@gnu.org>2019-01-07 14:14:50 +0100
committerLudovic Courtès <ludo@gnu.org>2019-01-07 14:41:01 +0100
commit915c6bf60cd6bd69fafc3acc69fac1242c3d96a3 (patch)
tree1fd9d2ce43bca2ea32bffba36af7e232de44db10 /gnu/packages/machine-learning.scm
parent6fd5a80dbe7013fc37aa1228051d02b42ee76527 (diff)
gnu: python2-fastlmm: Move to machine-learning.scm.
This is a step towards removing OCaml modules from the closure of (gnu packages python). * gnu/packages/python.scm (python2-fastlmm): Move to... * gnu/packages/machine-learning.scm (python2-fastlmm): ... here.
Diffstat (limited to 'gnu/packages/machine-learning.scm')
-rw-r--r--gnu/packages/machine-learning.scm34
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 084e62cca4..39ac7cad7c 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -873,3 +873,37 @@ the following advantages:
such as online, hashing, allreduce, reductions, learning2search, active, and
interactive learning.")
(license license:bsd-3)))
+
+(define-public python2-fastlmm
+ (package
+ (name "python2-fastlmm")
+ (version "0.2.21")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "fastlmm" version ".zip"))
+ (sha256
+ (base32
+ "1q8c34rpmwkfy3r4d5172pzdkpfryj561897z9r3x22gq7813x1m"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2)) ; only Python 2.7 is supported
+ (propagated-inputs
+ `(("python2-numpy" ,python2-numpy)
+ ("python2-scipy" ,python2-scipy)
+ ("python2-matplotlib" ,python2-matplotlib)
+ ("python2-pandas" ,python2-pandas)
+ ("python2-scikit-learn" ,python2-scikit-learn)
+ ("python2-pysnptools" ,python2-pysnptools)))
+ (native-inputs
+ `(("unzip" ,unzip)
+ ("python2-cython" ,python2-cython)
+ ("python2-mock" ,python2-mock)
+ ("python2-nose" ,python2-nose)))
+ (home-page "http://research.microsoft.com/en-us/um/redmond/projects/mscompbio/fastlmm/")
+ (synopsis "Perform genome-wide association studies on large data sets")
+ (description
+ "FaST-LMM, which stands for Factored Spectrally Transformed Linear Mixed
+Models, is a program for performing both single-SNP and SNP-set genome-wide
+association studies (GWAS) on extremely large data sets.")
+ (license license:asl2.0)))