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| author | Ben Woodcroft <donttrustben@gmail.com> | 2016-06-15 12:21:20 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2016-06-27 21:35:16 +1000 |
| commit | 94ff31572d37e9e49813b2e1fddd323cde0103e4 (patch) | |
| tree | db5b3d2037dc988568be8f8a2ebee0d7797f5c8b /gnu/packages/patches/khmer-use-libraries.patch | |
| parent | 9ded1457172d38960258c8a2b695ffb0d33ad8c9 (diff) | |
gnu: Add khmer.
* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Diffstat (limited to 'gnu/packages/patches/khmer-use-libraries.patch')
| -rw-r--r-- | gnu/packages/patches/khmer-use-libraries.patch | 16 |
1 files changed, 16 insertions, 0 deletions
diff --git a/gnu/packages/patches/khmer-use-libraries.patch b/gnu/packages/patches/khmer-use-libraries.patch new file mode 100644 index 0000000000..47d163a99a --- /dev/null +++ b/gnu/packages/patches/khmer-use-libraries.patch @@ -0,0 +1,16 @@ +Change setup.cfg so that the bundled zlib and bzip2 are not used. This cannot +currently be achieved using "--library z,bz2" as instructed in the setup.py. + +diff --git a/setup.cfg b/setup.cfg +index c054092..080992e 100644 +--- a/setup.cfg ++++ b/setup.cfg +@@ -1,7 +1,7 @@ + [build_ext] + define = SEQAN_HAS_BZIP2,SEQAN_HAS_ZLIB + undef = NO_UNIQUE_RC +-# libraries = z,bz2 ++libraries = z,bz2 + ## if using system libraries + include-dirs = lib:third-party/zlib:third-party/bzip2:third-party/seqan/core/include:third-party/smhasher + # include-dirs = lib |