diff options
| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-01-14 14:36:32 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-01-14 14:43:25 +0100 |
| commit | 0047d26a220805a99c84d9b87c73e012a63919e1 (patch) | |
| tree | 1428f2e8a83d00279caf7b0b9f90afb5442c45f7 /gnu/packages/patches | |
| parent | 2d12284d389df5cbe05c7162397b929d9a4dbee6 (diff) | |
gnu: bowtie: Update to 2.2.6.
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
Diffstat (limited to 'gnu/packages/patches')
| -rw-r--r-- | gnu/packages/patches/bowtie-fix-makefile.patch | 31 |
1 files changed, 0 insertions, 31 deletions
diff --git a/gnu/packages/patches/bowtie-fix-makefile.patch b/gnu/packages/patches/bowtie-fix-makefile.patch deleted file mode 100644 index 5ac65731cb..0000000000 --- a/gnu/packages/patches/bowtie-fix-makefile.patch +++ /dev/null @@ -1,31 +0,0 @@ -From 4a99b0023bdfbbe486b9649489a32ea184c18c9a Mon Sep 17 00:00:00 2001 -From: Valentin Antonescu <valentin@jhu.edu> -Date: Tue, 2 Dec 2014 11:19:13 -0500 -Subject: [PATCH] Make sure the Mavericks test happens only under Darwin. - ---- - Makefile | 11 +++++------ - 1 file changed, 5 insertions(+), 6 deletions(-) - -diff --git a/Makefile b/Makefile -index d74f7c8..a4cdfa7 100644 ---- a/Makefile -+++ b/Makefile -@@ -54,12 +54,11 @@ endif - MACOS = 0 - ifneq (,$(findstring Darwin,$(shell uname))) - MACOS = 1 --endif -- --ifneq (,$(findstring 13,$(shell uname -r))) -- CPP = clang++ -- CC = clang -- EXTRA_FLAGS += -stdlib=libstdc++ -+ ifneq (,$(findstring 13,$(shell uname -r))) -+ CPP = clang++ -+ CC = clang -+ EXTRA_FLAGS += -stdlib=libstdc++ -+ endif - endif - - POPCNT_CAPABILITY ?= 1 |