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authorRicardo Wurmus <rekado@elephly.net>2020-03-05 21:46:12 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-03-05 21:46:12 +0100
commita098b3498052e046c8338e0630e0166bcb12355d (patch)
tree99c7f261b528f1c40f257b5d9d622382a1ed8e6d /gnu/packages/python-xyz.scm
parent7032c1cc6040a14e482e71b0cfbdedf957da4f8a (diff)
gnu: python-anndata: Update to 0.7.1.
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.1. [arguments]: Move check phase after install phase; delete one test. [propagated-inputs]: Add python-importlib-metadata, python-numcodecs, python-packaging, and python-zarr. [native-inputs]: Add python-joblib, python-pytest, and python-setuptools-scm.
Diffstat (limited to 'gnu/packages/python-xyz.scm')
-rw-r--r--gnu/packages/python-xyz.scm27
1 files changed, 24 insertions, 3 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 0505ad5f40..bf82f5934f 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -15819,20 +15819,41 @@ N-dimensional arrays for Python.")
(define-public python-anndata
(package
(name "python-anndata")
- (version "0.6.18")
+ (version "0.7.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "anndata" version))
(sha256
(base32
- "03x83yjaccbqszj7x4fwwmpil0ai59yx64d1zmf2691za3j03w73"))))
+ "0rnfbpr55j1a1bi2kd4mz444741hrn74kz90h5rnjr59jmpfnh09"))))
(build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'delete-inconvenient-tests
+ (lambda _
+ ;; This test depends on python-scikit-learn.
+ (delete-file "anndata/tests/test_inplace_subset.py")
+ #t))
+ (delete 'check)
+ (add-after 'install 'check
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (add-installed-pythonpath inputs outputs)
+ (invoke "pytest" "-vv"))))))
(propagated-inputs
`(("python-h5py" ,python-h5py)
+ ("python-importlib-metadata" ,python-importlib-metadata)
("python-natsort" ,python-natsort)
+ ("python-numcodecs" ,python-numcodecs)
+ ("python-packaging" ,python-packaging)
("python-pandas" ,python-pandas)
- ("python-scipy" ,python-scipy)))
+ ("python-scipy" ,python-scipy)
+ ("python-zarr" ,python-zarr)))
+ (native-inputs
+ `(("python-joblib" ,python-joblib)
+ ("python-pytest" ,python-pytest)
+ ("python-setuptools-scm" ,python-setuptools-scm)))
(home-page "https://github.com/theislab/anndata")
(synopsis "Annotated data for data analysis pipelines")
(description "Anndata is a package for simple (functional) high-level APIs