diff options
author | Ricardo Wurmus <rekado@elephly.net> | 2023-08-28 17:27:46 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2023-08-28 18:00:03 +0200 |
commit | 67f43837692e9522fb772aa2ee0106fd2d1fcbff (patch) | |
tree | 4f5bbe9160a33cbdd89226fe6db4173352d593c0 /gnu/packages | |
parent | 71a7dcb268f4b4924f1a9316e4f9bb1958e54220 (diff) |
gnu: Add r-derfinder.
* gnu/packages/bioconductor.scm (r-derfinder): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioconductor.scm | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a7f4c464b0..b4730b0168 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4960,6 +4960,52 @@ space. This can help to create visualisations that are more representative of heterogeneity in the original high-dimensional space.") (license license:expat))) +(define-public r-derfinder + (package + (name "r-derfinder") + (version "1.34.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "derfinder" version)) + (sha256 + (base32 + "1gb65hk26ffn0njsgwgk43z9i9bcvx89pz5m9x951c2a07c1xrcw")))) + (properties `((upstream-name . "derfinder"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-biocgenerics + r-biocparallel + r-bumphunter + r-derfinderhelper + r-genomeinfodb + r-genomicalignments + r-genomicfeatures + r-genomicfiles + r-genomicranges + r-hmisc + r-iranges + r-qvalue + r-rsamtools + r-rtracklayer + r-s4vectors)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/lcolladotor/derfinder") + (synopsis + "Annotation-agnostic differential expression analysis of RNA-seq data") + (description + "This package provides functions for annotation-agnostic differential +expression analysis of RNA-seq data. Two implementations of the DER Finder +approach are included in this package: + +@enumerate +@item single base-level F-statistics and +@item DER identification at the expressed regions-level. +@end enumerate + +The DER Finder approach can also be used to identify differentially bounded +@code{ChIP-seq} peaks.") + (license license:artistic2.0))) + (define-public r-derfinderhelper (package (name "r-derfinderhelper") |