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authorRicardo Wurmus <rekado@elephly.net>2019-09-05 23:33:52 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-09-06 15:00:49 +0200
commit7cd446fd3f1d3b5dce4800d1daba2fa31a07f1b2 (patch)
tree1f897c7fc9f56dfd846ee3305cf811ca5bf8a5c9 /gnu/packages
parent41ba4cf1503cc7448aa99813438cc5bdf2c00c1c (diff)
gnu: Add r-txdb-celegans-ucsc-ce6-ensgene.
* gnu/packages/bioconductor.scm (r-txdb-celegans-ucsc-ce6-ensgene): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm25
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3ba5415597..37cd51d16c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -708,6 +708,31 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
based on the knownGene track.")
(license license:artistic2.0)))
+(define-public r-txdb-celegans-ucsc-ce6-ensgene
+ (package
+ (name "r-txdb-celegans-ucsc-ce6-ensgene")
+ (version "3.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "TxDb.Celegans.UCSC.ce6.ensGene"
+ version 'annotation))
+ (sha256
+ (base32
+ "1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"))))
+ (properties
+ `((upstream-name . "TxDb.Celegans.UCSC.ce6.ensGene")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-genomicfeatures" ,r-genomicfeatures)))
+ (home-page "https://bioconductor.org/packages/TxDb.Celegans.UCSC.ce6.ensGene/")
+ (synopsis "Annotation package for C elegans TxDb objects")
+ (description
+ "This package exposes a C elegans annotation database generated from UCSC
+by exposing these as TxDb objects.")
+ (license license:artistic2.0)))
+
(define-public r-fdb-infiniummethylation-hg19
(package
(name "r-fdb-infiniummethylation-hg19")