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authorRicardo Wurmus <rekado@elephly.net>2022-04-26 16:43:47 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-04-26 16:50:32 +0200
commit1c3c00a8a19780290e35bf176691fbd93ac617ac (patch)
treeb691b6880402a0708a3e388dc42dde6e5ebd65b8 /gnu/packages
parent58f3727767dc6b7ffd27d9cea87cf391845bbba6 (diff)
gnu: Add bart.
* gnu/packages/image-processing.scm (bart): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/image-processing.scm53
1 files changed, 52 insertions, 1 deletions
diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm
index ba6b522f52..1995f71cc2 100644
--- a/gnu/packages/image-processing.scm
+++ b/gnu/packages/image-processing.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2017 John Darrington <jmd@gnu.org>
-;;; Copyright © 2017, 2019 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2017, 2019, 2022 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2014, 2021-2022 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
@@ -38,6 +38,7 @@
(define-module (gnu packages image-processing)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
+ #:use-module (guix gexp)
#:use-module (guix utils)
#:use-module (guix download)
#:use-module (guix git-download)
@@ -69,6 +70,7 @@
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
#:use-module (gnu packages imagemagick)
+ #:use-module (gnu packages linux)
#:use-module (gnu packages maths)
#:use-module (gnu packages pdf)
#:use-module (gnu packages perl)
@@ -91,6 +93,55 @@
#:use-module (ice-9 match)
#:use-module (srfi srfi-1))
+;; TODO: this is not reproducible.
+(define-public bart
+ (package
+ (name "bart")
+ (version "0.7.00")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/mrirecon/bart")
+ (commit "d1b0e576c3f759089915565d5bf57832acf7b03e")))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "159rj3agr9pb9lg38b56rnw3d8wcbkmb2n718z26zpy4c6a6d9rn"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:test-target "utest"
+ #:make-flags #~(list
+ (string-append "PREFIX=" #$output)
+ "OPENBLAS=1"
+ "SCALAPACK=1"
+ (string-append "BLAS_BASE=" #$(this-package-input "openblas"))
+ (string-append "FFTW_BASE=" #$(this-package-input "fftw")))
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure)
+ (add-after 'unpack 'patch-/bin/bash
+ (lambda _
+ (substitute* "tests/pics.mk"
+ (("/bin/bash") (which "bash"))))))))
+ (inputs
+ (list fftw
+ fftwf
+ libpng
+ openblas
+ python
+ scalapack))
+ (native-inputs
+ (list doxygen
+ util-linux)) ;for flock
+ (home-page "https://mrirecon.github.io/bart/")
+ (synopsis "Toolbox for computational magnetic resonance imaging")
+ (description "The Berkeley Advanced Reconstruction Toolbox (BART) is an
+image-reconstruction framework for Computational Magnetic Resonance Imaging.
+The tools in this software implement various reconstruction algorithms for
+Magnetic Resonance Imaging.")
+ (license license:bsd-3)))
+
(define-public dcmtk
(package
(name "dcmtk")