summaryrefslogtreecommitdiff
path: root/gnu/packages
diff options
context:
space:
mode:
authorLiliana Marie Prikler <liliana.prikler@gmail.com>2023-06-08 15:33:29 +0200
committerLiliana Marie Prikler <liliana.prikler@gmail.com>2023-06-08 15:33:29 +0200
commit909788c0aebd8098084c009afa98d1209c9ec869 (patch)
treeffe6735a2db3b0ac595b90a52825fe82eca9b803 /gnu/packages
parent16a5ce3bb7fbd14fb17a6ba6a62fb079d2379fcc (diff)
parent872b2487451c39020a78ed3227992fb02a7ed5e5 (diff)
Merge branch 'master' into gnome-team
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/admin.scm12
-rw-r--r--gnu/packages/agda.scm246
-rw-r--r--gnu/packages/bioconductor.scm6
-rw-r--r--gnu/packages/bioinformatics.scm151
-rw-r--r--gnu/packages/compression.scm10
-rw-r--r--gnu/packages/conky.scm4
-rw-r--r--gnu/packages/cpp.scm27
-rw-r--r--gnu/packages/cran.scm144
-rw-r--r--gnu/packages/databases.scm8
-rw-r--r--gnu/packages/education.scm12
-rw-r--r--gnu/packages/efi.scm59
-rw-r--r--gnu/packages/emacs-xyz.scm6
-rw-r--r--gnu/packages/embedded.scm44
-rw-r--r--gnu/packages/fltk.scm8
-rw-r--r--gnu/packages/fonts.scm13
-rw-r--r--gnu/packages/geo.scm4
-rw-r--r--gnu/packages/glib.scm5
-rw-r--r--gnu/packages/gnome.scm7
-rw-r--r--gnu/packages/gnuzilla.scm12
-rw-r--r--gnu/packages/guile-xyz.scm4
-rw-r--r--gnu/packages/haskell-xyz.scm42
-rw-r--r--gnu/packages/image.scm47
-rw-r--r--gnu/packages/kde-frameworks.scm4
-rw-r--r--gnu/packages/kde.scm15
-rw-r--r--gnu/packages/kerberos.scm36
-rw-r--r--gnu/packages/linux.scm27
-rw-r--r--gnu/packages/lisp-xyz.scm24
-rw-r--r--gnu/packages/lisp.scm144
-rw-r--r--gnu/packages/machine-learning.scm146
-rw-r--r--gnu/packages/mail.scm11
-rw-r--r--gnu/packages/maths.scm180
-rw-r--r--gnu/packages/messaging.scm9
-rw-r--r--gnu/packages/mpd.scm25
-rw-r--r--gnu/packages/music.scm4
-rw-r--r--gnu/packages/networking.scm7
-rw-r--r--gnu/packages/nim.scm8
-rw-r--r--gnu/packages/notcurses.scm18
-rw-r--r--gnu/packages/package-management.scm59
-rw-r--r--gnu/packages/password-utils.scm6
-rw-r--r--gnu/packages/patches/agda-categories-remove-incompatible-flags.patch31
-rw-r--r--gnu/packages/patches/agda-categories-use-find.patch31
-rw-r--r--gnu/packages/patches/agda-libdirs-env-variable.patch49
-rw-r--r--gnu/packages/patches/agda-stdlib-use-runhaskell.patch28
-rw-r--r--gnu/packages/patches/d-feet-drop-unused-meson-argument.patch36
-rw-r--r--gnu/packages/patches/hdf4-architectures.patch75
-rw-r--r--gnu/packages/patches/proj-7-initialize-memory.patch98
-rw-r--r--gnu/packages/patches/proot-add-clone3.patch114
-rw-r--r--gnu/packages/patches/sbcl-riscv-Make-contribs-build-again.patch71
-rw-r--r--gnu/packages/pdf.scm4
-rw-r--r--gnu/packages/python-xyz.scm347
-rw-r--r--gnu/packages/statistics.scm20
-rw-r--r--gnu/packages/video.scm31
-rw-r--r--gnu/packages/vpn.scm56
-rw-r--r--gnu/packages/web-browsers.scm4
-rw-r--r--gnu/packages/wxwidgets.scm1
-rw-r--r--gnu/packages/xdisorg.scm25
-rw-r--r--gnu/packages/xfce.scm28
-rw-r--r--gnu/packages/xorg.scm46
58 files changed, 2123 insertions, 566 deletions
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index f0eed185dd..3193aa1456 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -9,7 +9,7 @@
;;; Copyright © 2016, 2017, 2020 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021, 2022 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016-2023 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Peter Feigl <peter.feigl@nexoid.at>
;;; Copyright © 2016 John J. Foerch <jjfoerch@earthlink.net>
;;; Copyright © 2016, 2017 Nikita <nikita@n0.is>
@@ -2603,24 +2603,20 @@ characters can be replaced as well, as can UTF-8 characters.")
(define-public tree
(package
(name "tree")
- (version "2.1.0")
+ (version "2.1.1")
(source (origin
(method url-fetch)
(uri (string-append
"https://mama.indstate.edu/users/ice/tree/src/tree-"
version ".tgz"))
(sha256
- (base32 "1xmbxgx72w7ddjlqsx1yys076hp3h7ll968bhdmdrc7jpwswaq01"))))
+ (base32 "1mchmdkq77d4c2mx7xmarccbk46a3sm2aqslarjwgxrs81gxbhyk"))))
(build-system gnu-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
- (delete 'configure) ; No configure script.
- (add-after 'unpack 'fix-manpage-version
- (lambda _
- (substitute* "doc/tree.1"
- (("Tree 2\\.0\\.0") (string-append "Tree " #$version))))))
+ (delete 'configure)) ; No configure script.
#:tests? #f ; No check target.
#:make-flags
#~(list (string-append "PREFIX=" #$output)
diff --git a/gnu/packages/agda.scm b/gnu/packages/agda.scm
index 7128a3f108..88626b823c 100644
--- a/gnu/packages/agda.scm
+++ b/gnu/packages/agda.scm
@@ -5,6 +5,7 @@
;;; Copyright © 2018, 2022 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 John Soo <jsoo1@asu.edu>
;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2023 Josselin Poiret <dev@jpoiret.xyz>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -22,9 +23,15 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages agda)
+ #:use-module (gnu packages)
#:use-module (gnu packages haskell-check)
#:use-module (gnu packages haskell-web)
#:use-module (gnu packages haskell-xyz)
+ #:use-module (gnu packages imagemagick)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages sphinx)
+ #:use-module (gnu packages texinfo)
+ #:use-module (guix build-system agda)
#:use-module (guix build-system emacs)
#:use-module (guix build-system gnu)
#:use-module (guix build-system haskell)
@@ -37,15 +44,18 @@
(define-public agda
(package
(name "agda")
- (version "2.6.2.2")
+ (version "2.6.3")
(source
(origin
- (method url-fetch)
- (uri (hackage-uri "Agda" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/agda/agda.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
- (base32 "0yjjbhc593ylrm4mq4j01nkdvh7xqsg5in30wxj4y53vf5hkggp5"))))
+ (base32 "1s7zd01i8pmvi90ywx497kc07z50nah7h0fc2dn6jzb132k5sh1q"))
+ (patches (search-patches "agda-libdirs-env-variable.patch"))))
(build-system haskell-build-system)
- (properties '((upstream-name . "Agda")))
(inputs
(list ghc-aeson
ghc-alex
@@ -68,7 +78,14 @@
ghc-strict
ghc-unordered-containers
ghc-uri-encode
+ ghc-vector-hashtables
ghc-zlib))
+ (native-inputs
+ (list python
+ python-sphinx
+ python-sphinx-rtd-theme
+ texinfo
+ imagemagick))
(arguments
(list #:modules `((guix build haskell-build-system)
(guix build utils)
@@ -85,7 +102,22 @@
(let ((agda-compiler (string-append #$output "/bin/agda")))
(for-each (cut invoke agda-compiler <>)
(find-files (string-append #$output "/share")
- "\\.agda$"))))))))
+ "\\.agda$")))))
+ (add-after 'agda-compile 'install-info
+ (lambda _
+ (with-directory-excursion "doc/user-manual"
+ (invoke "sphinx-build" "-b" "texinfo"
+ "." "_build_texinfo")
+ (with-directory-excursion "_build_texinfo"
+ (setenv "infodir" (string-append #$output
+ "/share/info"))
+ (invoke "make" "install-info"))))))))
+ (search-paths
+ (list (search-path-specification
+ (variable "AGDA_LIBDIRS")
+ (files (list "lib/agda")))))
+ (native-search-paths
+ search-paths)
(home-page "https://wiki.portal.chalmers.se/agda/")
(synopsis
"Dependently typed functional programming language and proof assistant")
@@ -106,58 +138,184 @@ such as Coq, Epigram and NuPRL.")
(define-public emacs-agda2-mode
(package
- (inherit agda)
(name "emacs-agda2-mode")
+ (version (package-version agda))
+ (source (package-source agda))
(build-system emacs-build-system)
- (inputs '())
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'enter-elisp-dir
- (lambda _ (chdir "src/data/emacs-mode") #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'enter-elisp-dir
+ (lambda _ (chdir "src/data/emacs-mode"))))))
(home-page "https://agda.readthedocs.io/en/latest/tools/emacs-mode.html")
(synopsis "Emacs mode for Agda")
(description "This Emacs mode enables interactive development with
-Agda. It also aids the input of Unicode characters.")))
+Agda. It also aids the input of Unicode characters.")
+ (license (package-license agda))))
(define-public agda-ial
+ (let ((revision "1")
+ ;; There hasn't been a release in a long time, and the last one
+ ;; doesn't build with Agda 2.6.
+ (commit "ded30c410d5d40142249686572aa1acd1b2f8cc7"))
+ (package
+ (name "agda-ial")
+ (version (git-version "1.5.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference (url "https://github.com/cedille/ial")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0xn6zvp1wnm0i84pz1rfbzfmayd15ch4i5s11ycd88d22pxd55dc"))))
+ (build-system agda-build-system)
+ (arguments
+ (list
+ #:gnu-and-haskell? #t
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'patch-dependencies
+ (lambda _ (patch-shebang "find-deps.sh")))
+ (replace 'build
+ (lambda _
+ (invoke "make"))))))
+ (home-page "https://github.com/cedille/ial")
+ (synopsis "The Iowa Agda Library")
+ (description
+ "The goal is to provide a concrete library focused on verification
+examples, as opposed to mathematics. The library has a good number
+of theorems for booleans, natural numbers, and lists. It also has
+trees, tries, vectors, and rudimentary IO. A number of good ideas
+come from Agda's standard library.")
+ (license license:expat))))
+
+(define-public agda-stdlib
(package
- (name "agda-ial")
- (version "1.5.0")
- (home-page "https://github.com/cedille/ial")
+ (name "agda-stdlib")
+ (version "1.7.2")
(source (origin
(method git-fetch)
- (uri (git-reference (url home-page)
- (commit (string-append "v" version))))
+ (uri (git-reference
+ (url "https://github.com/agda/agda-stdlib")
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
- "0dlis6v6nzbscf713cmwlx8h9n2gxghci8y21qak3hp18gkxdp0g"))))
- (build-system gnu-build-system)
- (inputs
- (list agda))
+ "065hf24xjpciwdrvk4isslgcgi01q0k93ql0y1sjqqvy5ryg5xmy"))))
+ (build-system agda-build-system)
(arguments
- `(#:parallel-build? #f
- #:phases
- (modify-phases %standard-phases
- (delete 'configure)
- (add-before 'build 'patch-dependencies
- (lambda _ (patch-shebang "find-deps.sh") #t))
- (delete 'check)
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (include (string-append out "/include/agda/ial")))
- (for-each (lambda (file)
- (make-file-writable file)
- (install-file file include))
- (find-files "." "\\.agdai?(-lib)?$"))
- #t))))))
- (synopsis "The Iowa Agda Library")
+ (list
+ #:plan '(("^\\./README.agda$" "-i."))
+ #:gnu-and-haskell? #t
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'generate-everything
+ (lambda* (#:key inputs native-inputs #:allow-other-keys)
+ (invoke
+ (search-input-file (or native-inputs inputs) "/bin/runhaskell")
+ "GenerateEverything.hs"))))))
+ (native-inputs (list ghc-filemanip))
+ (synopsis "The Agda Standard Library")
(description
- "The goal is to provide a concrete library focused on verification
-examples, as opposed to mathematics. The library has a good number
-of theorems for booleans, natural numbers, and lists. It also has
-trees, tries, vectors, and rudimentary IO. A number of good ideas
-come from Agda's standard library.")
+ "The standard library aims to contain all the tools needed to write
+both programs and proofs easily. While we always try and write efficient
+code, we prioritize ease of proof over type-checking and normalization
+performance. If computational performance is important to you, then perhaps
+try agda-prelude instead.")
+ (home-page "https://wiki.portal.chalmers.se/agda/pmwiki.php")
+ (license license:expat)))
+
+(define-public agda-categories
+ (package
+ (name "agda-categories")
+ (version "0.1.7.2")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/agda/agda-categories.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0xwgm2mfl2pxipsv31bin8p14y1yhd9n27lv3clvsxd4z9yc034m"))
+ (patches (search-patches "agda-categories-remove-incompatible-flags.patch"
+ "agda-categories-use-find.patch"))))
+ (build-system agda-build-system)
+ (arguments
+ (list
+ #:gnu-and-haskell? #t
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'build
+ (lambda _
+ (invoke "make"))))))
+ (propagated-inputs
+ (list agda-stdlib))
+ (synopsis "New Categories library for Agda")
+ (description "A new Categories library for Agda")
+ (home-page "https://github.com/agda/agda-categories")
(license license:expat)))
+
+(define-public agda-cubical
+ ;; Upstream's HEAD follows the latest Agda release, but they don't release
+ ;; until a newer Agda release comes up, so their releases are always one
+ ;; version late.
+ (let* ((revision "1")
+ (commit "814d54b08b360b8e80828065f54b80e3a98a0092"))
+ (package
+ (name "agda-cubical")
+ (version (git-version "0.4" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/agda/cubical.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0d25gb1qzpx539k62qjsjq4xmzp34qk7n3hmd9y6v8slhrrxw312"))))
+ (build-system agda-build-system)
+ (arguments
+ (list
+ #:gnu-and-haskell? #t
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'build
+ (lambda _
+ (invoke "make"))))))
+ (synopsis "Standard library for Cubical Agda")
+ (description "A standard library for Cubical Agda, comparable to
+agda-stdlib but using cubical methods.")
+ (home-page "https://github.com/agda/cubical")
+ (license license:expat))))
+
+(define-public agda-1lab
+ ;; Upstream doesn't do releases (yet). Use a commit that builds with 2.6.3,
+ ;; since they use Agda HEAD.
+ (let* ((revision "1")
+ (commit "47ca1d23640a6f49a3abe3c2fe27738bcc10c9c6"))
+ (package
+ (name "agda-1lab")
+ (version (git-version "0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/plt-amy/1lab.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0j7mp6c0xd0849skdxzncklkxynxnyfrbpcjv4qp5p1xfn0dnfqx"))))
+ (build-system agda-build-system)
+ (arguments
+ (list #:plan '(("src/index\\.lagda\\.md$"))))
+ (synopsis "Reference resource for mathematics done in Homotopy Type Theory")
+ (description "A formalised, cross-linked reference resource for
+mathematics done in Homotopy Type Theory. Unlike the HoTT book, the 1lab is
+not a “linear” resource: Concepts are presented as a directed graph, with
+links indicating dependencies.")
+ (home-page "https://1lab.dev")
+ (license license:agpl3))))
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ec52cd6e2d..00701c4463 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10313,17 +10313,18 @@ fitting of some classes of graphical Markov models.")
(define-public r-ggpicrust2
(package
(name "r-ggpicrust2")
- (version "1.6.5")
+ (version "1.7.0")
(source (origin
(method url-fetch)
(uri (cran-uri "ggpicrust2" version))
(sha256
(base32
- "02ais1y3z85vykxd9975gz33s80d1nhivly6a07y98dbmlzjyr6a"))))
+ "0rw2nrmnniff5hb56r21rk0mphba74fppxsa5ps2xamg1a63qfyw"))))
(properties `((upstream-name . "ggpicrust2")))
(build-system r-build-system)
(propagated-inputs (list r-aldex2
r-aplot
+ r-circlize
r-deseq2
r-dplyr
r-edger
@@ -10341,6 +10342,7 @@ fitting of some classes of graphical Markov models.")
r-summarizedexperiment
r-tibble
r-tidyr))
+ (native-inputs (list r-knitr))
(home-page "https://github.com/cafferychen777/ggpicrust2")
(synopsis "Make PICRUSt2 output analysis and visualization easier")
(description
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0b67d8fbe6..9ce28596c2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1337,6 +1337,75 @@ pretty, publication-quality figures for next-generation sequencing
experiments.")
(license license:expat)))
+(define-public python-bulkvis
+ (let ((commit "00a82a90c7e748a34af896e779d27e78a2c82b5e")
+ (revision "2"))
+ (package
+ (name "python-bulkvis")
+ (version (git-version "2.0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/LooseLab/bulkVis")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "02blai158xyyqcg0ljzkmfa6ci05m4awrl4njvp9nwfp717xq8n0"))
+ (modules '((guix build utils)))
+ (snippet
+ '(substitute* '("requirements.txt"
+ "setup.py")
+ (("tqdm~=4.46.1") "tqdm")
+ (("tornado~=6.0.4") "tornado")
+ (("pandas~=1.0.5") "pandas")
+ (("h5py~=2.10.0") "h5py")
+ ;; See below for com
+ (("bokeh~=2.1.0") "bokeh")))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:tests? #f ;There are no tests
+ #:phases
+ '(modify-phases %standard-phases
+ ;; See https://github.com/LooseLab/bulkvis/issues/58
+ (add-after 'unpack 'bokeh-compatibility
+ (lambda _
+ (substitute* "bulkvis/bulkvis.py"
+ (("import importlib" m)
+ (string-append m "
+from bokeh.command.subcommand import Argument
+from bokeh.util.dataclasses import entries\n"))
+ (("( *)_parser.add_argument" m indent)
+ (string-append
+ (string-join (list "if isinstance(opts, Argument):\n"
+ " opts = dict(entries(opts))\n")
+ indent 'prefix)
+ m))))))))
+ (propagated-inputs (list python-bokeh
+ python-dill
+ python-h5py
+ python-joblib
+ python-matplotlib
+ python-numpy
+ python-pandas
+ python-plotly
+ python-readpaf
+ python-scikit-learn
+ python-scikit-image
+ python-scipy
+ python-seaborn
+ python-tornado-6
+ python-tqdm
+ python-umap-learn))
+ (native-inputs (list python-pytest))
+ (home-page "https://github.com/LooseLab/bulkVis")
+ (synopsis "Interactive visualization of bulk RNA-seq data")
+ (description
+ "This is a Python package for the interactive visualization of bulk
+RNA-seq data. It provides a range of plotting functions and interactive tools
+to explore and analyze bulk RNA-seq data.")
+ (license license:expat))))
+
(define-public python-cell2cell
(package
(name "python-cell2cell")
@@ -1480,6 +1549,69 @@ from high-throughput single-cell RNA sequencing (scRNA-seq) data.")
and sequence consensus.")
(license license:expat)))
+(define-public python-decoupler-py
+ ;; This latest commit fixes a bug in test_omnip.py.
+ (let ((commit "b84c524ec4a9280a56c0db963e2c7b010316ce8f")
+ (revision "1"))
+ (package
+ (name "python-decoupler-py")
+ (version (git-version "1.3.1" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/saezlab/decoupler-py")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0d74yr5jqc52vcxaca84kxqw7m5rbazpmvnrcp2y4xxrj6yr1sfc"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ '(list "-k"
+ ;; These tests require internet access
+ (string-append "not test_get_resource"
+ " and not test_show_resources"
+ " and not test_get_dorothea"
+ " and not test_get_progeny"
+ ;; XXX This one fails because the "texts" list
+ ;; is empty, so there are no texts to adjust.
+ ;; It is not clear whether this a compatibility
+ ;; problem with our adjusttext package.
+ " and not test_plot_volcano"))
+ #:phases
+ '(modify-phases %standard-phases
+ (add-before 'check 'set-home
+ ;; Some tests require a home directory to be set.
+ (lambda _ (setenv "HOME" "/tmp")))
+ ;; Numba needs a writable dir to cache functions.
+ (add-before 'build 'set-numba-cache-dir
+ (lambda _ (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
+ (propagated-inputs (list python-adjusttext
+ python-anndata
+ python-ipython
+ python-matplotlib
+ python-nbsphinx
+ python-numba
+ python-numpy
+ python-numpydoc
+ python-omnipath
+ python-scanpy
+ python-scikit-learn
+ python-scipy
+ python-skranger
+ python-tqdm
+ python-typing-extensions))
+ (native-inputs (list python-pytest))
+ (home-page "https://github.com/saezlab/decoupler-py")
+ (synopsis
+ "Framework for modeling, analyzing and interpreting single-cell RNA-seq data")
+ (description
+ "This package provides different statistical methods to extract
+biological activities from omics data within a unified framework.")
+ (license license:gpl3+))))
+
(define-public python-demuxem
(package
(name "python-demuxem")
@@ -1998,6 +2130,25 @@ alignments and perform the following operations:
")
(license license:expat)))
+(define-public python-readpaf
+ (package
+ (name "python-readpaf")
+ (version "0.0.10")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "readpaf" version))
+ (sha256
+ (base32
+ "15m6ffks4zwpp1ycwk6n02py6mw2yh7qr0vhpc178b91gldr97ia"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-pandas))
+ (home-page "https://github.com/alexomics/read-paf")
+ (synopsis "Minimap2 PAF file reader")
+ (description
+ "This is a fast parser for minimap2 PAF (Pairwise mApping Format)
+files.")
+ (license license:expat)))
+
(define-public bioperl-minimal
(package
(name "bioperl-minimal")
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index 8a8b94c07b..bedc6ecca9 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -7,7 +7,7 @@
;;; Copyright © 2015, 2016, 2017, 2018, 2020, 2021, 2022 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2017, 2018 Leo Famulari <leo@famulari.name>
;;; Copyright © 2015 Jeff Mickey <j@codemac.net>
-;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015-2023 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org>
;;; Copyright © 2016–2022 Tobias Geerinckx-Rice <me@tobias.gr>
@@ -2687,12 +2687,8 @@ to their original, binary CD format.")
(build-system cmake-build-system)
(arguments
(list #:configure-flags
- #~(list "-DLIBDEFLATE_BUILD_STATIC_LIB=NO")
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda _
- (invoke "../source/scripts/run_tests.sh"))))))
+ #~(list "-DLIBDEFLATE_BUILD_STATIC_LIB=NO"
+ "-DLIBDEFLATE_BUILD_TESTS=YES")))
(inputs
(list zlib))
(home-page "https://github.com/ebiggers/libdeflate")
diff --git a/gnu/packages/conky.scm b/gnu/packages/conky.scm
index 9843cbe3c0..afc6374554 100644
--- a/gnu/packages/conky.scm
+++ b/gnu/packages/conky.scm
@@ -40,7 +40,7 @@
(package
(name "conky")
(home-page "https://github.com/brndnmtthws/conky")
- (version "1.12.2")
+ (version "1.19.2")
(source
(origin
(method git-fetch)
@@ -49,7 +49,7 @@
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1grxapl4q37fzk2rsijwz2rrl0aj520y8daki6bg48jb9vjd39n7"))))
+ (base32 "196wqr477fch1152cqmf11ckwrgkk2wmhl56ms6jk19hfs83d980"))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
diff --git a/gnu/packages/cpp.scm b/gnu/packages/cpp.scm
index 9983213f7f..365b15a3b9 100644
--- a/gnu/packages/cpp.scm
+++ b/gnu/packages/cpp.scm
@@ -25,7 +25,7 @@
;;; Copyright © 2021 jgart <jgart@dismail.de>
;;; Copyright © 2021 Julien Lepiller <julien@lepiller.eu>
;;; Copyright © 2021 Disseminate Dissent <disseminatedissent@protonmail.com>
-;;; Copyright © 2022 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2022, 2023 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2022 muradm <mail@muradm.net>
;;; Copyright © 2022 Attila Lendvai <attila@lendvai.name>
;;; Copyright © 2022 Arun Isaac <arunisaac@systemreboot.net>
@@ -821,7 +821,7 @@ tools:
;; header
(package
(name "cpp-httplib")
- (version "0.8.8")
+ (version "0.12.5")
(source
(origin
(method git-fetch)
@@ -829,16 +829,19 @@ tools:
(url "https://github.com/yhirose/cpp-httplib")
(commit (string-append "v" version))))
(sha256
- (base32 "0c0gyfbvm34bgrqy9fhfxw1f8nb9zhf063j7xq91k892flb7qm1c"))
+ (base32 "1m1p6h1dsxg4kg5zziffb6xl8zgjbkw7gmgmmlnrhpl3bswam87n"))
(file-name (git-file-name name version))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
'("-DBUILD_SHARED_LIBS=ON"
+ "-DHTTPLIB_TEST=ON"
"-DHTTPLIB_COMPILE=ON"
"-DHTTPLIB_REQUIRE_BROTLI=ON"
"-DHTTPLIB_REQUIRE_OPENSSL=ON"
"-DHTTPLIB_REQUIRE_ZLIB=ON")
+ #:make-flags
+ '(,(string-append "CXX=" (cxx-for-target)))
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'disable-network-tests
@@ -850,21 +853,19 @@ tools:
(string-append "(DISABLED_" test))))
;; There are tests requiring network access, disable them
'("AbsoluteRedirectTest" "BaseAuthTest" "CancelTest"
+ "ConnectionErrorTest"
"ChunkedEncodingTest" "ChunkedEncodingTest"
+ "ClientDefaultHeadersTest"
"DecodeWithChunkedEncoding" "DefaultHeadersTest"
"DigestAuthTest" "HttpsToHttpRedirectTest"
+ "HostnameToIPConversionTest"
"RangeTest" "RedirectTest" "RelativeRedirectTest"
- "SSLClientTest" "SendAPI" "TooManyRedirectTest" "UrlWithSpace"
- "YahooRedirectTest" "YahooRedirectTest"))))
- (replace 'check
- (lambda* (#:key source tests? #:allow-other-keys)
- ;; openssl genrsa wants to write a file in the git checkout
- (when tests?
- (with-directory-excursion "../source/test"
- (invoke "make"))))))))
+ "SSLClientTest" "SendAPI"
+ "SpecifyServerIPAddressTest"
+ "TooManyRedirectTest" "UrlWithSpace"
+ "YahooRedirectTest" "YahooRedirectTest")))))))
(native-inputs
- ;; required to build shared lib
- (list python))
+ (list googletest python))
(inputs
(list brotli openssl zlib))
(home-page "https://github.com/yhirose/cpp-httplib")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 688621343e..53c49e3ac7 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1927,13 +1927,13 @@ Prism-look is achieved with @code{theme_prism()} and
(define-public r-ggrastr
(package
(name "r-ggrastr")
- (version "1.0.1")
+ (version "1.0.2")
(source (origin
(method url-fetch)
(uri (cran-uri "ggrastr" version))
(sha256
(base32
- "07sx5wlawfyb0zy5am2q1ajhkdym5r9ih47p57l8bv4dlc7ykml2"))))
+ "1l90mlb6bqq98ifmlbs5481vch9inmzdnvnz192adklrr9nl09yb"))))
(properties `((upstream-name . "ggrastr")))
(build-system r-build-system)
(propagated-inputs (list r-cairo r-ggbeeswarm r-ggplot2 r-png r-ragg))
@@ -6203,13 +6203,13 @@ most popular ones.")
(define-public r-sp
(package
(name "r-sp")
- (version "1.6-0")
+ (version "1.6-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "sp" version))
(sha256
- (base32 "1npwz49qmlqz46jrwlmv4929hb3wv3whxzj1bplyipp7h2z7z5zm"))))
+ (base32 "09d3jhk7iwjfhzyq0cwws1p5gspj9nxww5x7xvngh8hr9gan5wkn"))))
(build-system r-build-system)
(propagated-inputs
(list r-lattice))
@@ -7784,14 +7784,14 @@ or between integer vectors representing generic sequences.")
(define-public r-ucminf
(package
(name "r-ucminf")
- (version "1.1-4.3")
+ (version "1.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ucminf" version))
(sha256
(base32
- "1vjrbavj909wlsyb82dq3rybk0nqay6vl81f2qiqrm12ks9pw3js"))))
+ "1x3d3l500kyqamzfjpz4qc38d6d3sha9av3rpxz0m4dhms28zpas"))))
(build-system r-build-system)
(native-inputs (list gfortran))
(home-page "https://cran.r-project.org/web/packages/ucminf/")
@@ -10804,15 +10804,17 @@ methods.")
(define-public r-catdap
(package
(name "r-catdap")
- (version "1.3.5")
+ (version "1.3.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "catdap" version))
(sha256
(base32
- "0fyhl69z2lznymvpzxra9qvcg85ggzkfjy68c6mzdmf1ja44d2k5"))))
+ "0z84bx808hy70bkzdda9l42ljh9i9pz07isxq756axi7nr0ky6p9"))))
(build-system r-build-system)
+ (propagated-inputs
+ (list r-rcolorbrewer))
(native-inputs
(list gfortran))
(home-page "https://cran.r-project.org/web/packages/catdap/")
@@ -11023,14 +11025,14 @@ simple method for converting between file types.")
(define-public r-maptools
(package
(name "r-maptools")
- (version "1.1-6")
+ (version "1.1-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "maptools" version))
(sha256
(base32
- "024kyq81gwpl7shil63nng1z6pgqcwy6j6wj44gj7ch3vd9dz9fn"))))
+ "0m576fzaaqbz1pqjv585841k93xnmx844kpsjzivmpfyvhbmw81v"))))
(build-system r-build-system)
(propagated-inputs
(list r-foreign r-lattice r-sp))
@@ -12769,14 +12771,14 @@ contains or can be specified by the user.")
(define-public r-biasedurn
(package
(name "r-biasedurn")
- (version "2.0.9")
+ (version "2.0.10")
(source
(origin
(method url-fetch)
(uri (cran-uri "BiasedUrn" version))
(sha256
(base32
- "02bb81x1hfvhm6qlcvp88bdpm1fhqak9cjbqz1r7fhg2qfxjpims"))))
+ "0jv0zvz1zs34h12zdgn3lqmn7hfkk2z6fkwbd9mlyddf34rkvfqv"))))
(properties `((upstream-name . "BiasedUrn")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/BiasedUrn/")
@@ -15318,14 +15320,14 @@ ROPE percentage and pd).")
(define-public r-performance
(package
(name "r-performance")
- (version "0.10.3")
+ (version "0.10.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "performance" version))
(sha256
(base32
- "1l4sr6cgg8rkgs5w98a36n79b1lbg241p60grsnz12hskppa1a6q"))))
+ "0ddwfkrzwbj1bykvifzrb11hs5kh2a6ykr3ac1hi7cqpqikymfna"))))
(build-system r-build-system)
(propagated-inputs
(list r-bayestestr r-datawizard r-insight))
@@ -18188,14 +18190,14 @@ library.")
(define-public r-ontologyindex
(package
(name "r-ontologyindex")
- (version "2.10")
+ (version "2.11")
(source
(origin
(method url-fetch)
(uri (cran-uri "ontologyIndex" version))
(sha256
(base32
- "0hisb9scxyyqkxhxhvgsgwix54pkq0zma3xq3ywczyazvzcxd5f9"))))
+ "17ndvqvb74b980gpb3hpg9bd68bb5f52k9s1i2kd1f9cdrdjvw97"))))
(properties `((upstream-name . "ontologyIndex")))
(build-system r-build-system)
(native-inputs
@@ -18576,14 +18578,14 @@ packages.")
(define-public r-assertive-code
(package
(name "r-assertive-code")
- (version "0.0-3")
+ (version "0.0-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "assertive.code" version))
(sha256
(base32
- "1qhbp668zfvhqs8avkhg9amp4zyazz6dsy4fc6kpdmw3sv8yi07g"))))
+ "11qkhbjyxw0njzhcszyc2452518yrn3jr5l4n9jnzq10xms090ig"))))
(properties
`((upstream-name . "assertive.code")))
(build-system r-build-system)
@@ -25192,14 +25194,18 @@ effect size.")
(define-public r-rgdal
(package
(name "r-rgdal")
- (version "1.6-6")
+ (version "1.6-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "rgdal" version))
(sha256
- (base32 "16irhw858771bc8ikshxk3ddpd7ymwgqmhnac4g7f160vymdfhnp"))))
- (properties `((upstream-name . "rgdal")))
+ (base32 "0cxfmm7niixw3dnbqm7a00603dyqjrphajqx0q5vjpdhmpyysp2m"))))
+ (properties
+ `((upstream-name . "rgdal")
+ (updater-extra-inputs . ("gdal" "proj"))
+ ;; These are only needed for Windows
+ (updater-ignored-inputs . ("curl" "openssl" "openssh" "pcre2"))))
(build-system r-build-system)
(inputs
(list gdal proj zlib))
@@ -27915,21 +27921,58 @@ it may be seen by an animal with less acute vision.")
classification and regression models.")
(license license:gpl2+)))
+(define-public r-caretensemble
+ (package
+ (name "r-caretensemble")
+ (version "2.0.2")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "caretEnsemble" version))
+ (sha256
+ (base32
+ "0kagw1ilfz1yy1q0ysmkp3f13k08hiq84xk7d0xp5p7d5dsg7z6q"))))
+ (properties `((upstream-name . "caretEnsemble")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-caret
+ r-data-table
+ r-digest
+ r-ggplot2
+ r-gridextra
+ r-lattice
+ r-pbapply
+ r-plyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/zachmayer/caretEnsemble")
+ (synopsis "Ensembles of caret models")
+ (description
+ "This is a framework for fitting multiple caret models. It uses the same
+re-sampling strategy as well as creating ensembles of such models. Use
+@code{caretList} to fit multiple models and then use @code{caretEnsemble} to
+combine them greedily or @code{caretStack} to combine them using a caret
+model.")
+ (license license:expat)))
+
(define-public r-adabag
(package
(name "r-adabag")
- (version "4.3")
+ (version "5.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "adabag" version))
(sha256
(base32
- "1v4cl50wbv834cpbwkkhaq5wf8s746fp8xkjrwvyw912x6b2zmik"))))
+ "03nnqgia61pavic9l6av0hh81wilxlkrx3g244ypar1fv9ppan7c"))))
(properties `((upstream-name . "adabag")))
(build-system r-build-system)
(propagated-inputs
- (list r-caret r-doparallel r-foreach r-rpart))
+ (list r-caret
+ r-consrank
+ r-doparallel
+ r-dplyr
+ r-foreach
+ r-rpart
+ r-tidyr))
(home-page "https://cran.r-project.org/web/packages/adabag/")
(synopsis "Multiclass AdaBoost.M1, SAMME and Bagging")
(description
@@ -29527,14 +29570,14 @@ least squares.")
(define-public r-regsem
(package
(name "r-regsem")
- (version "1.9.3")
+ (version "1.9.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "regsem" version))
(sha256
(base32
- "0vpizmdml55naxmhy9nfcm9ylhy15p9na7l0c6z3rvk29ck3g3sw"))))
+ "0lvsy7byrhiizyhwnwr22v8g36735nb0liyzl1nzk0py9rjbv4kk"))))
(properties `((upstream-name . "regsem")))
(build-system r-build-system)
(propagated-inputs
@@ -29554,14 +29597,14 @@ perform @dfn{exploratory mediation} (XMed).")
(define-public r-stanheaders
(package
(name "r-stanheaders")
- (version "2.26.25")
+ (version "2.26.26")
(source
(origin
(method url-fetch)
(uri (cran-uri "StanHeaders" version))
(sha256
(base32
- "1xds719xga7144mxirjnqxmcv1ncj5fb5z247blm4dkbn9q2vg4k"))))
+ "1jr5sflqhg70jkgz3x0q9nrk2xjzm1l4zmyc7j89m755b209sq4k"))))
(properties `((upstream-name . "StanHeaders")))
(build-system r-build-system)
(inputs (list pandoc))
@@ -31265,14 +31308,14 @@ here.")
(define-public r-projpred
(package
(name "r-projpred")
- (version "2.5.0")
+ (version "2.6.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "projpred" version))
(sha256
(base32
- "0faf0hq5kvibqyzgqqz2sdqms8g3vvxy6calpm6d2wzmbczi5v5n"))))
+ "1nkil537n43sz0ajkcyr0i38hb852qgcdxlgnirqkl0w98ax2hac"))))
(properties `((upstream-name . "projpred")))
(build-system r-build-system)
(propagated-inputs
@@ -31290,7 +31333,7 @@ here.")
r-rcpp
r-rcpparmadillo
r-rstantools
- r-ucminf))
+ r-scales))
(native-inputs (list r-knitr r-rmarkdown))
(home-page "https://mc-stan.org/projpred/")
(synopsis "Projection predictive feature selection")
@@ -31702,14 +31745,14 @@ designed to be distributed and efficient with the following goals:
(define-public r-shapforxgboost
(package
(name "r-shapforxgboost")
- (version "0.1.1")
+ (version "0.1.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "SHAPforxgboost" version))
(sha256
(base32
- "106nsf02b1w3yshb55lwnyw1rl1a60162v2wk8znjz3b4ln3mqj5"))))
+ "0b3h6py80a0dmb8f8j4h7a7d0k6ld8l0qr24r8pxxy7dbqbyxh5x"))))
(properties
`((upstream-name . "SHAPforxgboost")))
(build-system r-build-system)
@@ -31900,6 +31943,33 @@ a Huber regression warm start. Confidence intervals for regression
coefficients are constructed using multiplier bootstrap.")
(license license:gpl3)))
+(define-public r-consrank
+ (package
+ (name "r-consrank")
+ (version "2.1.3")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "ConsRank" version))
+ (sha256
+ (base32
+ "0v1dr7zj2fpgncymakv5qszdrlqzvc5zxfyc3yrsj09gbm0gvyby"))))
+ (properties `((upstream-name . "ConsRank")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-gtools r-proxy r-rgl r-rlist r-tidyr))
+ (home-page "https://www.r-project.org/")
+ (synopsis
+ "Compute median rankings according to Kemeny's axiomatic approach")
+ (description
+ "This package lets you compute the median ranking according to Kemeny's
+axiomatic approach. Rankings can or cannot contain ties, rankings can be both
+complete or incomplete. The package contains both branch-and-bound algorithms
+and heuristic solutions recently proposed. The searching space of the
+solution can either be restricted to the universe of the permutations or
+unrestricted to all possible ties. The package also provides some useful
+utilities for deal with preference rankings, including both element-weight
+Kemeny distance and correlation coefficient.")
+ (license license:gpl3)))
+
(define-public r-fastshap
(package
(name "r-fastshap")
@@ -33395,13 +33465,13 @@ observations.")
(define-public r-scico
(package
(name "r-scico")
- (version "1.3.1")
+ (version "1.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "scico" version))
(sha256
- (base32 "1f2czfhzdpi5dqjbxvbrrcnxjpylc5zzghj70ihlh2agq3n9hw5g"))))
+ (base32 "1zcsqmsr9vjs4krz8vmq4z59wh6x25g9ca6yxb0wlq58nmws77k6"))))
(properties `((upstream-name . "scico")))
(build-system r-build-system)
(propagated-inputs (list r-scales))
@@ -36953,14 +37023,14 @@ the @code{raster} package that is suitable for extracting raster values using
(define-public r-stringfish
(package
(name "r-stringfish")
- (version "0.15.7")
+ (version "0.15.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "stringfish" version))
(sha256
(base32
- "0ddpsi7z0kzqgbq9y646pk9afclq0r7ak22zsdh0i93ni0x71c9l"))))
+ "16w3i3d7jw2s1hzxr3mngrh7yjxvhswqdlpjw5g4z25i84lixcnz"))))
(properties `((upstream-name . "stringfish")))
(build-system r-build-system)
(propagated-inputs
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 43f5f9c072..74483d27f7 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -4677,13 +4677,11 @@ algorithm implementations.")
(delete 'build) ; XXX the build is performed again during the install phase
(add-after 'unpack 'enter-source-directory
(lambda _ (chdir "python")))
- (add-after 'unpack 'make-git-checkout-writable
- (lambda _
- (for-each make-file-writable (find-files "."))))
- (add-before 'install 'set-PYARROW_WITH_PARQUET
+ (add-before 'install 'set-pyarrow-build-options
(lambda _
(setenv "PYARROW_BUNDLE_ARROW_CPP_HEADERS" "0")
- (setenv "PYARROW_WITH_PARQUET" "1"))))))
+ (setenv "PYARROW_WITH_PARQUET" "1")
+ (setenv "PYARROW_WITH_DATASET" "1"))))))
(propagated-inputs
(list (list apache-arrow "lib")
(list apache-arrow "include")
diff --git a/gnu/packages/education.scm b/gnu/packages/education.scm
index 406c1c1a35..4118c84bbf 100644
--- a/gnu/packages/education.scm
+++ b/gnu/packages/education.scm
@@ -2,7 +2,7 @@
;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org>
;;; Copyright © 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
-;;; Copyright © 2017, 2018, 2019, 2020, 2021, 2022 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2017-2023 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018-2023 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2020 Robert Smith <robertsmith@posteo.net>
@@ -150,7 +150,7 @@ of categories with some of the activities available in that category.
(define-public gcompris-qt
(package
(name "gcompris-qt")
- (version "2.3")
+ (version "3.2")
(source
(origin
(method url-fetch)
@@ -158,7 +158,7 @@ of categories with some of the activities available in that category.
"mirror://kde/stable/gcompris/qt/src/gcompris-qt-"
version ".tar.xz"))
(sha256
- (base32 "0qncknaaf168anh4cjp7dqz6qzgx948kvgr32j2vga8mjakqn1aj"))))
+ (base32 "06yisr5qd2ri8qgpmlri0yic45fdfcdjn12anp17f6kvv83lk2js"))))
(build-system qt-build-system)
(arguments
`(#:phases
@@ -183,13 +183,13 @@ of categories with some of the activities available in that category.
(list openssl
python-wrapper
qtbase-5
+ qtcharts
qtdeclarative-5
qtgraphicaleffects
qtmultimedia-5
- qtquickcontrols-5
+ qtquickcontrols2-5
qtsensors
- qtsvg-5
- qtxmlpatterns))
+ qtsvg-5))
(home-page "https://gcompris.net/index-en.html")
(synopsis "Educational games for small children")
(description
diff --git a/gnu/packages/efi.scm b/gnu/packages/efi.scm
index 75eb24bf86..499745eba1 100644
--- a/gnu/packages/efi.scm
+++ b/gnu/packages/efi.scm
@@ -30,6 +30,7 @@
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix build-system gnu)
#:use-module (guix download)
+ #:use-module (guix gexp)
#:use-module (guix git-download)
#:use-module (guix packages)
#:use-module (guix utils)
@@ -99,7 +100,7 @@ information.")
(define-public sbsigntools
(package
(name "sbsigntools")
- (version "0.9.4")
+ (version "0.9.5")
(source
(origin
(method git-fetch)
@@ -110,34 +111,32 @@ information.")
(recursive? #t)))
(file-name (git-file-name name version))
(sha256
- (base32 "1y76wy65y6k10mjl2dm5hb5ms475alr4s080xzj8y833x01xvf3m"))))
+ (base32 "060n6w0dx1mrilhdv482ncckanqz6pdv53piimiki0bm15d2fcp4"))))
(build-system gnu-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'patch-more-shebangs
- (lambda* (#:key inputs #:allow-other-keys)
- (substitute* "lib/ccan.git/tools/create-ccan-tree"
- (("#!/bin/bash")
- (string-append "#!"
- (assoc-ref inputs "bash")
- "/bin/bash")))
- #t))
- (add-after 'unpack 'patch
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (substitute* '("configure.ac"
- "tests/Makefile.am")
- (("/usr/include/efi")
- (string-append (assoc-ref inputs "gnu-efi")
- "/include/efi"))
- (("/usr/lib/gnuefi")
- (string-append (assoc-ref inputs "gnu-efi")
- "/lib")))
- #t))
- (add-after 'unpack 'setenv
- (lambda _
- (setenv "CC" "gcc")
- #t)))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-more-shebangs
+ (lambda* (#:key inputs native-inputs #:allow-other-keys)
+ (substitute* "lib/ccan.git/tools/create-ccan-tree"
+ (("#!/bin/bash")
+ (string-append "#!"
+ (search-input-file (or native-inputs inputs)
+ "/bin/bash"))))))
+ (add-after 'unpack 'patch
+ (lambda _
+ (substitute* '("configure.ac"
+ "tests/Makefile.am")
+ (("/usr/include/efi")
+ (string-append #$(this-package-input "gnu-efi")
+ "/include/efi"))
+ (("/usr/lib/gnuefi")
+ (string-append #$(this-package-input "gnu-efi")
+ "/lib")))))
+ (add-after 'unpack 'setenv
+ (lambda _
+ (setenv "CC" #$(cc-for-target)))))))
(native-inputs
(list autoconf
automake
@@ -146,9 +145,9 @@ information.")
pkg-config
util-linux)) ; getopt
(inputs
- `(("gnu-efi" ,gnu-efi)
- ("libuuid" ,util-linux "lib")
- ("openssl" ,openssl)))
+ (list gnu-efi
+ `(,util-linux "lib") ; libuuid
+ openssl))
(synopsis "EFI signing tools")
(description "This package provides tools for signing EFI binaries.")
(home-page "https://git.kernel.org/pub/scm/linux/kernel/git/jejb/sbsigntools.git/")
diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 7575049ea3..b77bd0aa83 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -36463,8 +36463,8 @@ headlines, keywords, tables and source blocks.")
(license license:gpl3+)))) ; License is in pyimport.el
(define-public emacs-straight-el
- (let ((commit "f21103d97d180fba0b6e2e86ebb0b6269219ef2c")
- (revision "1"))
+ (let ((commit "039e5c9a9b5c00749602afb41341e9e77ba09429")
+ (revision "2"))
(package
(name "emacs-straight-el")
(version (git-version "0" revision commit))
@@ -36477,7 +36477,7 @@ headlines, keywords, tables and source blocks.")
(commit commit)))
(file-name (git-file-name name version))
(sha256
- (base32 "1dqhb7kx4hr3cm4gj6qdk9aav05vc016y4nks2dj1sy88wia6wsv"))))
+ (base32 "05avzakgkwzrj1pxa1pkcv96knqq4mnkv2cszn4cs4kmvr2mchxm"))))
(build-system emacs-build-system)
(arguments
(list
diff --git a/gnu/packages/embedded.scm b/gnu/packages/embedded.scm
index 50a3abd1fd..215007dd31 100644
--- a/gnu/packages/embedded.scm
+++ b/gnu/packages/embedded.scm
@@ -69,6 +69,7 @@
#:use-module (gnu packages readline)
#:use-module (gnu packages swig)
#:use-module (gnu packages texinfo)
+ #:use-module (gnu packages tls)
#:use-module (gnu packages version-control)
#:use-module (gnu packages xorg)
#:use-module (srfi srfi-1))
@@ -511,7 +512,7 @@ languages are C and C++.")
(define-public libjaylink
(package
(name "libjaylink")
- (version "0.2.0")
+ (version "0.3.1")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -520,7 +521,7 @@ languages are C and C++.")
(file-name (git-file-name name version))
(sha256
(base32
- "0ndyfh51hiqyv2yscpj6qd091w7myxxjid3a6rx8f6k233vy826q"))))
+ "1wps72ir2kwdr7dphx4vp6cy0d46dm3nkwbk0mpryn9la09l7lm1"))))
(build-system gnu-build-system)
(native-inputs
(list autoconf automake libtool pkg-config))
@@ -535,7 +536,7 @@ SEGGER J-Link and compatible devices.")
(define-public jimtcl
(package
(name "jimtcl")
- (version "0.80")
+ (version "0.82")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -544,23 +545,22 @@ SEGGER J-Link and compatible devices.")
(file-name (git-file-name name version))
(sha256
(base32
- "06rn60cx9sapc175vxvan87b8j5rkhh5gvvz7343xznzwlr0wcgk"))))
+ "01nxqzn41797ypph1vpwjfh3zqgks0l8ihh6932b4kb83apy6f08"))))
(build-system gnu-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'configure
- ;; This package doesn't use autoconf.
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out")))
- (invoke "./configure"
- (string-append "--prefix=" out)))))
- (add-before 'check 'delete-failing-tests
- (lambda _
- ;; XXX All but 1 TTY tests fail (Inappropriate ioctl for device).
- (delete-file "tests/tty.test")
- #t))
- )))
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (replace 'configure
+ ;; This package doesn't use autoconf.
+ (lambda _
+ (invoke "./configure"
+ (string-append "--prefix=" #$output))))
+ (add-before 'check 'delete-failing-tests
+ (lambda _
+ ;; XXX All but 1 SSL tests fail (tries connecting to Google
+ ;; servers).
+ (delete-file "tests/ssl.test"))))))
+ (inputs (list openssl))
(native-inputs
;; For tests.
(list inetutils)) ; for hostname
@@ -573,7 +573,7 @@ language.")
(define-public openocd
(package
(name "openocd")
- (version "0.11.0")
+ (version "0.12.0")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -582,7 +582,7 @@ language.")
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "0qi4sixwvw1i7c64sy221fsjs82qf3asmdk86g74ds2jjm3f8pzp"))))
+ "09wb11zlmrw6rx1bql3kafgi3ilzp9mhvb6j6rql216by06csing"))))
(build-system gnu-build-system)
(native-inputs
(list autoconf
@@ -592,10 +592,10 @@ language.")
pkg-config
texinfo))
(inputs
- (list hidapi jimtcl libftdi libjaylink libusb-compat))
+ (list hidapi jimtcl libftdi libjaylink openssl))
(arguments
'(#:configure-flags
- (append (list "LIBS=-lutil"
+ (append (list "LIBS=-lutil -lcrypto -lssl"
"--disable-werror"
"--enable-sysfsgpio"
"--disable-internal-jimtcl"
diff --git a/gnu/packages/fltk.scm b/gnu/packages/fltk.scm
index 5a1582b1bc..4518a1e30a 100644
--- a/gnu/packages/fltk.scm
+++ b/gnu/packages/fltk.scm
@@ -4,7 +4,7 @@
;;; Copyright © 2015, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net>
;;; Copyright © 2018 Mark H Weaver <mhw@netris.org>
-;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2018, 2023 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2021 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
@@ -43,15 +43,15 @@
(define-public fltk
(package
(name "fltk")
- (version "1.3.6")
+ (version "1.3.8")
(source
(origin
(method url-fetch)
- (uri (string-append "http://fltk.org/pub/fltk/"
+ (uri (string-append "https://www.fltk.org/pub/fltk/"
(first (string-split version #\-))
"/fltk-" version "-source.tar.gz"))
(sha256
- (base32 "1arp1niiz3qxm8iacpmilwpc5rinsm6hsk4a6fsxfywvkvppbb4s"))))
+ (base32 "1gyisjwjbdsax4kbdm3hpijp2f0qgh1wk7wgad87l3pb0wmi1hgk"))))
(build-system gnu-build-system)
(native-inputs
(list pkg-config))
diff --git a/gnu/packages/fonts.scm b/gnu/packages/fonts.scm
index 0a897fcf0b..91e7ccc49f 100644
--- a/gnu/packages/fonts.scm
+++ b/gnu/packages/fonts.scm
@@ -19,7 +19,7 @@
;;; Copyright © 2017 Alex Griffin <a@ajgrf.com>
;;; Copyright © 2017 Clément Lassieur <clement@lassieur.org>
;;; Copyright © 2017 Brendan Tildesley <mail@brendan.scot>
-;;; Copyright © 2017, 2018, 2019, 2020, 2022 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2017–2023 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2017 Mohammed Sadiq <sadiq@sadiqpk.org>
;;; Copyright © 2018 Charlie Ritter <chewzerita@posteo.net>
;;; Copyright © 2018 Gabriel Hondet <gabrielhondet@gmail.com>
@@ -2845,18 +2845,7 @@ optimized for using musical symbols inline with regular text.")
(file-name (string-append name "-" version ".zip"))
(sha256
(base32 "1j8iv2dl695zrabs2knb7jsky8mjis29a2ddpna4by8mlvqrf0ml"))))
- (outputs '("out" "woff2"))
(build-system font-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'install 'install-woff2
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((dest (string-append (assoc-ref outputs "woff2")
- "/share/fonts/woff2")))
- (for-each (lambda (file)
- (install-file file dest))
- (find-files "." "\\.woff2$"))))))))
(home-page "https://practicaltypography.com/charter.html")
(synopsis "Charter fonts in OpenType and TrueType formats")
(description "Charter was designed by Matthew Carter in 1987 and was
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 25805fe2e5..6ad3c87ff1 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -738,7 +738,9 @@ lets developers use the functionality of Proj in their own software.")
version ".tar.gz"))
(sha256
(base32
- "050apzdn0isxpsblys1shrl9ccli5vd32kgswlgx1imrbwpg915k"))))
+ "050apzdn0isxpsblys1shrl9ccli5vd32kgswlgx1imrbwpg915k"))
+ (patches
+ (search-patches "proj-7-initialize-memory.patch"))))
(arguments
`(#:configure-flags '("-DUSE_EXTERNAL_GTEST=ON")
#:phases
diff --git a/gnu/packages/glib.scm b/gnu/packages/glib.scm
index de6de1f3f0..9400abe79a 100644
--- a/gnu/packages/glib.scm
+++ b/gnu/packages/glib.scm
@@ -524,7 +524,10 @@ be used when cross-compiling."
"/_giscanner"))))
#~()))))
(native-inputs
- `(("glib" ,glib "bin")
+ `(,@(if (%current-target-system)
+ `(("python" ,python))
+ '())
+ ("glib" ,glib "bin")
("pkg-config" ,pkg-config)
("bison" ,bison)
("flex" ,flex)))
diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 39d7dc5954..6db2d6569e 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -76,6 +76,7 @@
;;; Copyright © 2023 Kaelyn Takata <kaelyn.alexi@protonmail.com>
;;; Copyright © 2023 Juliana Sims <juli@incana.org>
;;; Copyright © 2023 Dominik Delgado Steuter <d@delgado.nrw>
+;;; Copyright © 2023 Zhu Zihao <all_but_last@163.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -2701,7 +2702,7 @@ on the GNOME Desktop with a single simple application.")
"/share/backgrounds/gnome"))
;; Do not reference fonts, that may not exist.
(("'Source Code Pro 10'") "'Monospace 11'")))))))
- (inputs (list glib gnome-backgrounds))
+ (inputs (list glib gnome-backgrounds gobject-introspection))
(native-inputs (list gettext-minimal
`(,glib "bin") ;glib-compile-schemas, etc.
gobject-introspection
@@ -7199,7 +7200,9 @@ principles are simplicity and standards compliance.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1jqw5ndpgyb0zxh0g21ai1911lfrm56vz18xbccfqm4sk95wwcw7"))))
+ "1jqw5ndpgyb0zxh0g21ai1911lfrm56vz18xbccfqm4sk95wwcw7"))
+ (patches
+ (search-patches "d-feet-drop-unused-meson-argument.patch"))))
(build-system meson-build-system)
(arguments
(list
diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm
index fd7f4565f9..e40d2b8922 100644
--- a/gnu/packages/gnuzilla.scm
+++ b/gnu/packages/gnuzilla.scm
@@ -518,9 +518,9 @@ variable defined below. It requires guile-json to be installed."
;; XXXX: Workaround 'snippet' limitations.
(define computed-origin-method (@@ (guix packages) computed-origin-method))
-(define %icecat-base-version "102.11.0")
+(define %icecat-base-version "102.12.0")
(define %icecat-version (string-append %icecat-base-version "-guix0-preview1"))
-(define %icecat-build-id "20230509000000") ;must be of the form YYYYMMDDhhmmss
+(define %icecat-build-id "20230606000000") ;must be of the form YYYYMMDDhhmmss
;; 'icecat-source' is a "computed" origin that generates an IceCat tarball
;; from the corresponding upstream Firefox ESR tarball, using the 'makeicecat'
@@ -540,12 +540,12 @@ variable defined below. It requires guile-json to be installed."
"firefox-" upstream-firefox-version ".source.tar.xz"))
(sha256
(base32
- "0cyfij00i9m1pwwyfhiq2qasbfr2ykdwziqykj8878kyjvkj1wg7"))))
+ "189irpd8xkwh3qixbbcmn5jblx7jz80rilcq8ihaawpmdh76safp"))))
;; The upstream-icecat-base-version may be older than the
;; %icecat-base-version.
- (upstream-icecat-base-version "102.11.0")
- (gnuzilla-commit "5a1894fc966840dc242110ec0459471c637a4675")
+ (upstream-icecat-base-version "102.12.0")
+ (gnuzilla-commit "b2d463b0e331795eebe3ee62f2c58c1bd05b9899")
(gnuzilla-source
(origin
(method git-fetch)
@@ -557,7 +557,7 @@ variable defined below. It requires guile-json to be installed."
(string-take gnuzilla-commit 8)))
(sha256
(base32
- "1816lm4cl45l1zbc043827rfnzzzxckhxk16gvj3a8kyg7fxvv3v"))))
+ "0db03i3xmapdr0xyb9yg6cl66kyxavnl22hhhnf85ffnlfrcdx2r"))))
;; 'search-patch' returns either a valid file name or #f, so wrap it
;; in 'assume-valid-file-name' to avoid 'local-file' warnings.
diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm
index a7b226091c..750e11d687 100644
--- a/gnu/packages/guile-xyz.scm
+++ b/gnu/packages/guile-xyz.scm
@@ -3843,7 +3843,7 @@ debugging code.")
(define-public guile-png
(package
(name "guile-png")
- (version "0.4.1")
+ (version "0.5.0")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -3852,7 +3852,7 @@ debugging code.")
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "1vkhv0dip0na6d9g478i587n5y6046vn5rsjmfnbibi9yx4rkrf8"))))
+ "0dnahq05mwxzbsqb0qjkyysylc54qr8l5839zyc4sanl2syzhvwk"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags '("GUILE_AUTO_COMPILE=0"))) ;to prevent guild warnings
diff --git a/gnu/packages/haskell-xyz.scm b/gnu/packages/haskell-xyz.scm
index 929ee08387..a819698710 100644
--- a/gnu/packages/haskell-xyz.scm
+++ b/gnu/packages/haskell-xyz.scm
@@ -31,6 +31,7 @@
;;; Copyright © 2021–2023 Alice BRENON <alice.brenon@ens-lyon.fr>
;;; Copyright © 2021 John Kehayias <john.kehayias@protonmail.com>
;;; Copyright © 2022 jgart <jgart@dismail.de>
+;;; Copyright © 2023 Josselin Poiret <dev@jpoiret.xyz>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -8602,6 +8603,26 @@ of functions that implement regular expression pattern matching using the same
syntax and semantics as Perl 5.")
(license license:bsd-3)))
+(define-public ghc-peano
+ (package
+ (name "ghc-peano")
+ (version "0.1.0.1")
+ (source (origin
+ (method url-fetch)
+ (uri (hackage-uri "peano" version))
+ (sha256
+ (base32
+ "0yzcxrl41dacvx2wkyxjj7hgvz56l4qb59r4h9rmaqd7jcwx5z9i"))))
+ (build-system haskell-build-system)
+ (arguments
+ `(#:cabal-revision ("3"
+ "0wl22dnz6ld300cg6id3lw991bp8kdfi8h0nbv37vn79i1zdcj5n")))
+ (home-page "http://hackage.haskell.org/package/peano")
+ (synopsis "Peano numbers")
+ (description "Provides an efficient Haskell implementation of Peano
+numbers")
+ (license license:bsd-3)))
+
(define-public ghc-persistent
(package
(name "ghc-persistent")
@@ -13308,6 +13329,27 @@ the vector; then you can execute the builder to actually produce the
vector.")
(license license:expat)))
+(define-public ghc-vector-hashtables
+ (package
+ (name "ghc-vector-hashtables")
+ (version "0.1.1.2")
+ (source (origin
+ (method url-fetch)
+ (uri (hackage-uri "vector-hashtables" version))
+ (sha256
+ (base32
+ "0hrjvy9qg1m5g3w91zxy4syqmp8jk7ajjbxbzkhy282dwfigkyd2"))))
+ (build-system haskell-build-system)
+ (inputs (list ghc-primitive ghc-vector ghc-hashable))
+ (native-inputs (list ghc-hspec ghc-quickcheck ghc-quickcheck-instances
+ hspec-discover))
+ (home-page "https://github.com/klapaucius/vector-hashtables#readme")
+ (synopsis "Efficient vector-based mutable hashtables implementation")
+ (description
+ "This package provides efficient vector-based hashtable implementation
+similar to .NET Generic Dictionary implementation (at the time of 2015).")
+ (license license:bsd-3)))
+
(define-public ghc-vector-th-unbox
(package
(name "ghc-vector-th-unbox")
diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index d1330d17f7..069a214b8c 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -571,9 +571,27 @@ official designation is ISO/IEC 29199-2). This library is an implementation of t
(sha256
(base32 "06f6d08xvmsiki4mc1qs985gsjqmsxx793a93b72y25q84wbg9x9"))))
(build-system gnu-build-system)
- (inputs (list libjpeg-turbo))
(arguments
- '(#:tests? #f)) ; no tests
+ `(#:tests? #f ; no tests
+ ,@(if (and (target-riscv64?)
+ (%current-target-system))
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'update-config-scripts
+ (lambda* (#:key native-inputs inputs #:allow-other-keys)
+ (for-each (lambda (file)
+ (install-file
+ (search-input-file
+ (or native-inputs inputs)
+ (string-append "/bin/" file)) "./tools"))
+ '("config.guess" "config.sub"))))))
+ '())))
+ (inputs (list libjpeg-turbo))
+ (native-inputs
+ (if (and (target-riscv64?)
+ (%current-target-system))
+ (list config)
+ '()))
(synopsis "Optimize JPEG images")
(description
"jpegoptim provides lossless optimization (based on optimizing
@@ -595,6 +613,25 @@ maximum quality factor.")
(base32
"1hjm8lwap7bjyyxsyi94fh5817xzqhk4kb5y0b7mb6675xw10prk"))))
(build-system gnu-build-system)
+ (arguments
+ (if (and (target-riscv64?)
+ (%current-target-system))
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'update-config-scripts
+ (lambda* (#:key native-inputs inputs #:allow-other-keys)
+ (for-each (lambda (file)
+ (install-file
+ (search-input-file
+ (or native-inputs inputs)
+ (string-append "/bin/" file)) "."))
+ '("config.guess" "config.sub"))))) )
+ '()))
+ (native-inputs
+ (if (and (target-riscv64?)
+ (%current-target-system))
+ (list config)
+ '()))
(inputs
(list libpng jasper))
(home-page "https://icns.sourceforge.io/")
@@ -2105,7 +2142,7 @@ losslessly translates between SNG and PNG.")
(define-public blurhash
(package
(name "blurhash")
- (version "0.0.1")
+ (version "0.2.0")
(source
(origin
(method git-fetch)
@@ -2114,10 +2151,10 @@ losslessly translates between SNG and PNG.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0jy2iigarskwfhskyladbb6l92x1fb3i3vz4bvcks0za4w5hfxk5"))))
+ (base32 "0hx15fspava43z47kv17ivxv56g03fb2zf45dl07v3shickqxw0x"))))
(build-system meson-build-system)
(native-inputs
- (list cmake doctest))
+ (list doctest pkg-config))
(home-page "https://github.com/Nheko-Reborn/blurhash")
(synopsis "C++ blurhash encoder/decoder")
(description "Simple encoder and decoder for blurhashes. Contains a
diff --git a/gnu/packages/kde-frameworks.scm b/gnu/packages/kde-frameworks.scm
index 058f64187d..1b802922a8 100644
--- a/gnu/packages/kde-frameworks.scm
+++ b/gnu/packages/kde-frameworks.scm
@@ -40,6 +40,7 @@
#:use-module (gnu packages acl)
#:use-module (gnu packages admin)
#:use-module (gnu packages aidc)
+ #:use-module (gnu packages aspell)
#:use-module (gnu packages attr)
#:use-module (gnu packages avahi)
#:use-module (gnu packages base)
@@ -1450,7 +1451,8 @@ system.")
(native-inputs
(list extra-cmake-modules pkg-config qttools-5))
(inputs
- (list hunspell
+ (list aspell
+ hunspell
;; TODO: hspell (for Hebrew), Voikko (for Finish)
qtdeclarative-5
qtbase-5))
diff --git a/gnu/packages/kde.scm b/gnu/packages/kde.scm
index f9c0a260f0..28b4ce1ee0 100644
--- a/gnu/packages/kde.scm
+++ b/gnu/packages/kde.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016, 2017, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2019-2021, 2023 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 David Craven <david@craven.ch>
;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be>
;;; Copyright © 2017, 2018 Mark Meyer <mark@ofosos.org>
@@ -516,15 +516,16 @@ the functionality of the KDE resource and network access abstractions.")
(define-public kirigami-addons
(package
(name "kirigami-addons")
- (version "0.3")
+ (version "0.8.0")
(source (origin
- (method url-fetch)
- (uri (string-append
- "https://invent.kde.org/libraries/kirigami-addons/-/archive/v"
- version "/kirigami-addons-v" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://invent.kde.org/libraries/kirigami-addons")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
(base32
- "1zr8dpc7bzw6g3y0jaxsr2lqlxqwlcphchpk8iah6g1f3n9fq73r"))))
+ "1bi6sc1fpycxj1ydd08gkbw1x1pi2ab6p9bk4175hm0mb0rykdir"))))
(build-system qt-build-system)
(arguments
(list #:tests? #f)) ; failing test
diff --git a/gnu/packages/kerberos.scm b/gnu/packages/kerberos.scm
index c553f8180a..241881ea47 100644
--- a/gnu/packages/kerberos.scm
+++ b/gnu/packages/kerberos.scm
@@ -183,14 +183,7 @@ After installation, the system administrator should generate keys using
(base32
"0f4dblav859p5hn7b2jdj1akw6d8p32as6bj6zym19kghh3s51zx"))
(patches
- (search-patches "heimdal-CVE-2022-45142.patch"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- (substitute* "configure"
- (("User=.*$") "User=Guix\n")
- (("Host=.*$") "Host=GNU")
- (("Date=.*$") "Date=2022\n"))))))
+ (search-patches "heimdal-CVE-2022-45142.patch"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
@@ -221,9 +214,20 @@ After installation, the system administrator should generate keys using
"/libexec/heimdal")))
#~()))
#:phases (modify-phases %standard-phases
+ ;; Skip the appl folder as obsolete per message from Brian May <brian@linuxpenguins.xyz>
+ ;; <MDAEMON-F202305111940.AA401569md5001000003030@sequoia-grove.ad.secure-endpoints.com>
+ (add-after 'unpack 'drop-obsolete-executables
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* '("Makefile.am")
+ (("appl") ""))))
(add-before 'configure 'pre-configure
(lambda* (#:key inputs #:allow-other-keys)
+ (invoke (search-input-file inputs "bin/autoreconf") "--install" "--force")
(substitute* "configure"
+ ;; Reproducible build date, etc.
+ (("User=.*$") "User=Guix\n")
+ (("Host=.*$") "Host=GNU\n")
+ (("Date=.*$") "Date=2022\n")
;; The e2fsprogs input is included for libcom_err,
;; let's use it even if cross-compiling.
(("test \"\\$\\{krb_cv_com_err\\}\" = \"yes\"")
@@ -232,15 +236,6 @@ After installation, the system administrator should generate keys using
;; which confuses heimdal.
(("ac_cv_prog_COMPILE_ET=\\$\\{with_cross_tools\\}compile_et")
"ac_cv_PROG_COMPILE_ET=compile_et"))
- (substitute* '("appl/afsutil/pagsh.c" "appl/su/su.c")
- (("/bin/sh")
- (search-input-file inputs "bin/sh"))
- ;; Use the cross-compiled bash instead of the
- ;; native bash (XXX shouldn't _PATH_BSHELL point
- ;; to a cross-compiled bash?).
- (("_PATH_BSHELL")
- (string-append
- "\"" (search-input-file inputs "bin/sh") "\"")))
(substitute* '("tools/Makefile.in")
(("/bin/sh") (which "sh")))))
(add-before 'check 'pre-check
@@ -255,12 +250,17 @@ After installation, the system administrator should generate keys using
(format #t "#!~a~%exit 1~%" (which "sh")))))))
;; Tests fail when run in parallel.
#:parallel-tests? #f))
- (native-inputs (list bison
+ (native-inputs (list autoconf
+ automake
+ bison
e2fsprogs ;for 'compile_et'
flex
+ libtool
texinfo
unzip ;for tests
pkg-config
+ perl
+ perl-json
python))
(inputs (list readline
bash-minimal
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index fc6f3cbda5..3bcc34374c 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -485,7 +485,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
;; The current "stable" kernels. That is, the most recently released major
;; versions that are still supported upstream.
-(define-public linux-libre-6.3-version "6.3.5")
+(define-public linux-libre-6.3-version "6.3.6")
(define-public linux-libre-6.3-gnu-revision "gnu")
(define deblob-scripts-6.3
(linux-libre-deblob-scripts
@@ -495,7 +495,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(base32 "0la20slh52jm4cg4v2liphhqqx4808gm6pfqcxiawj13a4ps9ygk")))
(define-public linux-libre-6.3-pristine-source
(let ((version linux-libre-6.3-version)
- (hash (base32 "0pl2zypsmrnna69850jadccffxwg9xdfkldg0sv8m44b7n64gkgm")))
+ (hash (base32 "1vr418rf0zd16fq4vaxda1w2ccng2n9l0ysakmgz9xqbz86iysks")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-6.3)))
@@ -503,7 +503,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
;; The "longterm" kernels — the older releases with long-term upstream support.
;; Here are the support timelines:
;; <https://www.kernel.org/category/releases.html>
-(define-public linux-libre-6.1-version "6.1.31")
+(define-public linux-libre-6.1-version "6.1.32")
(define-public linux-libre-6.1-gnu-revision "gnu")
(define deblob-scripts-6.1
(linux-libre-deblob-scripts
@@ -513,12 +513,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(base32 "1yv15mb278wlrn8gb2yjm0mczirzixy668h221vcpbz416ibxx1m")))
(define-public linux-libre-6.1-pristine-source
(let ((version linux-libre-6.1-version)
- (hash (base32 "1hbkw290kmf1dj8a255ik1gk5fk458c88m348dwrc3lrl6xifsg8")))
+ (hash (base32 "0v0saai735jzaj3dbpgp6sbdi95n3lmv78pbg1xy9fd2kfhbg23w")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-6.1)))
-(define-public linux-libre-5.15-version "5.15.114")
+(define-public linux-libre-5.15-version "5.15.115")
(define-public linux-libre-5.15-gnu-revision "gnu")
(define deblob-scripts-5.15
(linux-libre-deblob-scripts
@@ -528,12 +528,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(base32 "00n8c7ghfs36bvz0yjw6w9daf5zcgj94kxxn27bfyfm274rkddmz")))
(define-public linux-libre-5.15-pristine-source
(let ((version linux-libre-5.15-version)
- (hash (base32 "1lkpa9wv1qj90qdzzi71qf5dyy7mi95fixx3ymdp6xwz45fym0g9")))
+ (hash (base32 "050j9z0wg5glgxwbmzfq4l8lv8y7g3nc2rz8342yjdcjfxh6h1qv")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-5.15)))
-(define-public linux-libre-5.10-version "5.10.181")
+(define-public linux-libre-5.10-version "5.10.182")
(define-public linux-libre-5.10-gnu-revision "gnu1")
(define deblob-scripts-5.10
(linux-libre-deblob-scripts
@@ -543,12 +543,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(base32 "12jhak2bw1jy2jk70vrm66kjvh0cd6c8f2qiy2bk40rq7bf62mr6")))
(define-public linux-libre-5.10-pristine-source
(let ((version linux-libre-5.10-version)
- (hash (base32 "1rx43dkxspris9529vl11blzhvsxnpaqr6yb3fy089az7yvwxrmc")))
+ (hash (base32 "1xp9bxk2vyw29bq3z854ly4cj94z8i52yl5hq4a3l3j6564wb3ny")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-5.10)))
-(define-public linux-libre-5.4-version "5.4.244")
+(define-public linux-libre-5.4-version "5.4.245")
(define-public linux-libre-5.4-gnu-revision "gnu1")
(define deblob-scripts-5.4
(linux-libre-deblob-scripts
@@ -558,7 +558,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(base32 "070j069sj6spy2wkzfzm1d5jd7pffm0s1m917wblc8d3x8pbgvf8")))
(define-public linux-libre-5.4-pristine-source
(let ((version linux-libre-5.4-version)
- (hash (base32 "06x20aq7bv86ghv2sdsz3q2rmqh8h389x5zksr53fyzdjl72ixch")))
+ (hash (base32 "195ixy9l18mhwvzj7v63fkyifb9mysq950afxh6ixlpvg0c8h1wn")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-5.4)))
@@ -8159,7 +8159,7 @@ Text-based output formats: CSV, XML, Netfilter's LOG, Netfilter's conntrack
(define-public proot
(package
(name "proot")
- (version "5.3.0")
+ (version "5.4.0")
(source
(origin
(method git-fetch)
@@ -8168,7 +8168,10 @@ Text-based output formats: CSV, XML, Netfilter's LOG, Netfilter's conntrack
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1r1ga3xbwq5kx4i8ihj1p6nmgaa14lfkwxzpsbdcmfh1jimpbmzk"))))
+ (base32 "186qsg4yvisqjgf8w5jxhnlig7x341vpqwcgp8as3r59qmqkpmk7"))
+ ;; Waiting for upstream inclusion at
+ ;; https://github.com/proot-me/proot/pull/355
+ (patches (search-patches "proot-add-clone3.patch"))))
(build-system gnu-build-system)
;; Many architectures are not supported (see:
;; https://github.com/proot-me/proot/blob/master/src/arch.h#L51).
diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index fd09b4f52c..16deb85e5e 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -4978,7 +4978,7 @@ is a library for creating graphical user interfaces.")
(define-public sbcl-cl-webkit
(package
(name "sbcl-cl-webkit")
- (version "3.5.7")
+ (version "3.5.9")
(source
(origin
(method git-fetch)
@@ -4988,7 +4988,7 @@ is a library for creating graphical user interfaces.")
(file-name (git-file-name "cl-webkit" version))
(sha256
(base32
- "0aqkqcs0n5wkgjx3lb513fvm7f2jw3d5daisc9mw1bmbbcqh2sba"))))
+ "00h61p5mrvvbycp703isy0wvgqlfb7k0cidw4vg75y7s29m3k6k0"))))
(build-system asdf-build-system/sbcl)
(inputs
`(("cffi" ,sbcl-cffi)
@@ -21176,9 +21176,10 @@ window it creates as just another output for your graphics, analogous to how
(sbcl-package->cl-source-package sbcl-cepl))
(define-public sbcl-stmx
- ;; No release for years and recent commits contain fixes for revent SBCL versions.
- (let ((commit "a7bb44082cd53ee968965adff03d4351750711a1")
- (revision "1"))
+ ;; No release for years and recent commits contain fixes for recent SBCL
+ ;; versions.
+ (let ((commit "f71e742a50b85e3abc0af9bb5f02802f218a1705")
+ (revision "2"))
(package
(name "sbcl-stmx")
(version (git-version "2.0.5" revision commit))
@@ -21190,11 +21191,22 @@ window it creates as just another output for your graphics, analogous to how
(commit commit)))
(file-name (git-file-name name version))
(sha256
- (base32 "1hfmh4vj271jdilir97qs6nqbi5nmn5alyls0w3d3xxqwi6ffqjs"))))
+ (base32 "0q739mlw3s3z5kclzccz4r64ag38ks11fmd38109qwjv5knn69jv"))))
(build-system asdf-build-system/sbcl)
(inputs
(list sbcl-alexandria sbcl-bordeaux-threads sbcl-log4cl
sbcl-closer-mop sbcl-trivial-garbage))
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'fix-build
+ (lambda _
+ (substitute* "asm/transaction.lisp"
+ (("\\(ftype \\(function \\(\\) fixnum\\) transaction-begin\\)")
+ "(ftype (function () (unsigned-byte 32)) transaction-begin)")
+ (("\\(values fixnum &optional\\)")
+ "(unsigned-byte 32)")))))))
(home-page "https://stmx.org/")
(synopsis "High performance Transactional Memory for Common Lisp")
(description
diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index 000c8e8e66..a7e06dd34c 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -23,6 +23,7 @@
;;; Copyright © 2022 Joeke de Graaf <joeke@posteo.net>
;;; Copyright © 2021, 2022 jgart <jgart@dismail.de>
;;; Copyright © 2022 ( <paren@disroot.org>
+;;; Copyright © 2023 Zheng Junjie <873216071@qq.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -57,6 +58,7 @@
#:use-module (guix build-system haskell)
#:use-module (guix build-system trivial)
#:use-module (gnu packages admin)
+ #:use-module (gnu packages algebra)
#:use-module (gnu packages base)
#:use-module (gnu packages bash)
#:use-module (gnu packages bdw-gc)
@@ -83,6 +85,7 @@
#:use-module (gnu packages maths)
#:use-module (gnu packages multiprecision)
#:use-module (gnu packages ncurses)
+ #:use-module (gnu packages notcurses)
#:use-module (gnu packages onc-rpc)
#:use-module (gnu packages perl)
#:use-module (gnu packages readline)
@@ -93,7 +96,8 @@
#:use-module (gnu packages tls)
#:use-module (gnu packages version-control)
#:use-module (gnu packages xorg)
- #:use-module (ice-9 match))
+ #:use-module (ice-9 match)
+ #:use-module (srfi srfi-1))
(define-public cl-asdf
(package
@@ -428,20 +432,22 @@ an interpreter, a compiler, a debugger, and much more.")
(define-public sbcl
(package
(name "sbcl")
- (version "2.3.2")
+ (version "2.3.5")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/sbcl/sbcl/" version "/sbcl-"
version "-source.tar.bz2"))
(sha256
- (base32 "1ahyrc3p9cf7y5zbgzvb9yxa8a480ccis4ksijlajck3z8n1dk24"))
+ (base32 "11ji5n65l31249r0v7hm0wc0yk2ila0y746nj36xn1cxrwh0gjc9"))
(modules '((guix build utils)))
+ ;; backport from upstream.
+ (patches (search-patches "sbcl-riscv-Make-contribs-build-again.patch"))
(snippet
'(begin
;; Don't force ARMv5.
(substitute* "src/runtime/Config.arm-linux"
- (("-march=armv5") ""))))))
+ (("-march=armv5t") ""))))))
(build-system gnu-build-system)
(outputs '("out" "doc"))
(native-inputs
@@ -987,7 +993,7 @@ the HTML documentation of TXR.")
(define-public txr
(package
(name "txr")
- (version "286")
+ (version "287")
(source
(origin
(method git-fetch)
@@ -996,7 +1002,7 @@ the HTML documentation of TXR.")
(commit (string-append "txr-" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0c5prq9ans4qv8dgfn85555by9rb22p276g21w4mns0rqhjd0ij8"))))
+ (base32 "0bwa40l5c0dnpcpfbysqbv8ch58sycbb31dnskmhr387jlv938dl"))))
(build-system gnu-build-system)
(arguments
(list #:configure-flags
@@ -1478,3 +1484,129 @@ includes a compiler as well as an interpreter.")
license:expat ;; cii/LICENSE
license:gpl2+ ;; nana/gdb/test.c and others under nana/
license:bsd-3)))) ;; bench/*
+
+(define-public s7-bootstrap
+ ;; Need s7-bootstrap to build libc_s7.so (for the REPL) and run tests
+ (let ((commit "a5b4bb49f8bcd7c33ae2366065fc8c254b734460") ;no releases
+ (revision "0"))
+ (hidden-package
+ (package
+ (name "s7-bootstrap")
+ (version (git-version "23.3" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://cm-gitlab.stanford.edu/bil/s7.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "03n1axdlypzmbgzrhlwfqwa1xiw36hi25j2hwc7vw77mz90cd9f8"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list #:tests? #f ;no tests in bootstrap
+ #:phases #~(modify-phases %standard-phases
+ (delete 'configure) ;no configure
+ (replace 'build
+ (lambda _
+ ;; using build commands from s7 home page
+ (display "[BUILD] repl\n")
+ (invoke #$(cc-for-target) "s7.c" "-o" "repl"
+ "-I." "-O2" "-g"
+ "-DWITH_MAIN"
+ (string-append
+ "-DS7_LOAD_PATH=\""
+ #$output "/share/s7/scm\"")
+ "-ldl" "-lm"
+ "-Wl,-export-dynamic")
+ (display "[BUILD] nrepl\n")
+ (invoke #$(cc-for-target) "s7.c" "-o" "nrepl"
+ "-I." "-O2" "-g"
+ "-DWITH_MAIN" "-DWITH_NOTCURSES"
+ (string-append
+ "-DS7_LOAD_PATH=\""
+ #$output "/share/s7/scm\"")
+ "-ldl" "-lm" "-lnotcurses-core"
+ "-Wl,-export-dynamic")
+ (display "[BUILD] libarb_s7.so\n")
+ (invoke #$(cc-for-target) "libarb_s7.c"
+ "-I." "-O2" "-g"
+ "-shared" "-o" "libarb_s7.so"
+ "-larb" "-lflint" "-lmpc" "-fPIC")
+ (display "[BUILD] libnotcurses_s7.so\n")
+ (invoke #$(cc-for-target) "notcurses_s7.c"
+ "-I." "-O2" "-g"
+ "-shared" "-o" "libnotcurses_s7.so"
+ "-lnotcurses-core" "-fPIC")
+ ;; Need s7.o and ffitest for tests
+ (display "[BUILD] s7.o\n")
+ (invoke #$(cc-for-target) "-c" "s7.c" "-o"
+ "s7.o" "-I." "-O2" "-ldl" "-lm")
+ (display "[BUILD] ffitest\n")
+ (invoke #$(cc-for-target) "-o" "ffitest"
+ "ffitest.c" "-g2" "s7.o" "-lm" "-I."
+ "-ldl" "-Wl,-export-dynamic")))
+ (add-before 'check 'install-scm
+ ;; scm files need to be installed before testing
+ (lambda _
+ (for-each (lambda (x)
+ (install-file
+ x (string-append
+ #$output "/share/s7/scm/")))
+ (find-files "." "\\.scm"))))
+ (replace 'install
+ (lambda _
+ (let ((bin (string-append #$output "/bin"))
+ (share (string-append #$output
+ "/share/s7/"))
+ (doc (string-append #$output
+ "/share/doc/s7/"))
+ (lib (string-append #$output "/lib"))
+ (inc (string-append #$output "/include/")))
+ (install-file "repl" bin)
+ (install-file "nrepl" bin)
+ (install-file "ffitest" bin)
+ (install-file "libarb_s7.so" lib)
+ (install-file "libnotcurses_s7.so" lib)
+ (install-file "s7.c" share)
+ (install-file "s7.h" inc)
+ (install-file "s7.html" doc)))))))
+ (inputs (list arb flint mpc notcurses))
+ (home-page "https://ccrma.stanford.edu/software/snd/snd/s7.html")
+ (synopsis "Scheme interpreter intended as an extension language")
+ (description
+ "s7 is a Scheme interpreter intended as an extension language for
+other applications. It exists as just two files, @code{s7.c} and @code{s7.h},
+that may be copied into the source tree of another application. There are no
+libraries, no run-time init files, and no configuration scripts. It can also
+be built as a stand-alone REPL interpreter.")
+ (license license:bsd-0)))))
+
+(define-public s7
+ (package
+ (inherit s7-bootstrap)
+ (name "s7")
+ (arguments
+ (substitute-keyword-arguments (package-arguments s7-bootstrap)
+ ((#:tests? _) #t)
+ ((#:phases phases)
+ #~(modify-phases #$phases
+ (add-after 'unpack 'patch
+ (lambda _
+ (substitute* "s7.c"
+ (("libc_s7.so")
+ (string-append #$output "/lib/libc_s7.so")))))
+ (add-after 'build 'build-full
+ (lambda _
+ (invoke "repl" "./libc.scm")))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "repl" "./s7test.scm"))))
+ (add-after 'install 'install-full
+ (lambda _
+ (install-file "libc_s7.so"
+ (string-append #$output "/lib/"))
+ (delete-file (string-append #$output "/bin/ffitest"))))))))
+ (native-inputs (list s7-bootstrap))
+ (properties (alist-delete 'hidden? (package-properties s7-bootstrap)))))
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index c9bc5e8b68..827bcd597b 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -727,6 +727,112 @@ depend on language-specific pre- or post-processing.")
unsupervised text tokenizer.")
(license license:asl2.0)))
+(define-public python-spacy-legacy
+ (package
+ (name "python-spacy-legacy")
+ (version "3.0.12")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "spacy-legacy" version))
+ (sha256
+ (base32
+ "0x57aw1qgjrzgapsv1cwymqlck2anqm1bisvryhpq7bfkc66wzdk"))))
+ (build-system pyproject-build-system)
+ ;; This package depends on spacy, which depends on this package.
+ (arguments (list #:tests? #false))
+ (native-inputs (list python-pytest))
+ (home-page "https://spacy.io")
+ (synopsis "Legacy registered functions for spaCy backwards compatibility")
+ (description
+ "This package contains legacy registered functions for spaCy backwards
+compatibility.")
+ (license license:expat)))
+
+(define-public python-spacy-loggers
+ (package
+ (name "python-spacy-loggers")
+ (version "1.0.4")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "spacy-loggers" version))
+ (sha256
+ (base32
+ "0a5zjfxd0mci7pwda24ihg55whalpmjby4bvpgar2013f6zq7yg6"))))
+ (build-system pyproject-build-system)
+ ;; This package depends on spacy, which depends on this package.
+ (arguments (list #:tests? #false))
+ (native-inputs (list python-pytest))
+ (home-page "https://github.com/explosion/spacy-loggers")
+ (synopsis "Logging utilities for SpaCy")
+ (description "This package provides logging utilities for the SpaCy
+natural language processing framework.")
+ (license license:expat)))
+
+(define-public python-spacy
+ (package
+ (name "python-spacy")
+ (version "3.5.3")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "spacy" version))
+ (sha256
+ (base32
+ "13141hc966d8nxbnlwj01vhndgq0rq4nmii3qkb3hrap45kiv5rm"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ '(list "-k"
+ (string-append
+ ;; We don't do that around here.
+ "not test_download_compatibility"
+ ;; This needs to download a model.
+ " and not test_validate_compatibility_table"
+ ;; This tries to run the application with typer, which fails
+ ;; with an unspecified error, possibly because the build
+ ;; container doesn't have /bin/sh.
+ " and not test_project_assets"))
+ #:phases
+ '(modify-phases %standard-phases
+ (add-after 'build 'build-ext
+ (lambda _
+ (invoke "python" "setup.py" "build_ext" "--inplace"
+ "-j" (number->string (parallel-job-count))))))))
+ (propagated-inputs (list python-catalogue
+ python-cymem
+ python-jinja2
+ python-langcodes
+ python-murmurhash
+ python-numpy
+ python-packaging
+ python-pathy
+ python-preshed
+ python-pydantic
+ python-requests
+ python-setuptools
+ python-smart-open
+ python-spacy-legacy
+ python-spacy-loggers
+ python-srsly
+ python-thinc
+ python-tqdm
+ python-typer
+ python-typing-extensions
+ python-wasabi))
+ (native-inputs
+ (list python-cython python-pytest python-mock))
+ (home-page "https://spacy.io")
+ (synopsis "Natural Language Processing (NLP) in Python")
+ (description
+ "SpaCy is a library for advanced Natural Language Processing in Python
+and Cython. It comes with pretrained pipelines and currently supports
+tokenization and training for 70+ languages. It features state-of-the-art
+speed and neural network models for tagging, parsing, named entity
+recognition, text classification and more, multi-task learning with pretrained
+transformers like BERT, as well as a production-ready training system and easy
+model packaging, deployment and workflow management.")
+ (license license:expat)))
+
(define-public shogun
(package
(name "shogun")
@@ -1276,6 +1382,46 @@ computing environments.")
data analysis.")
(license license:bsd-3)))
+(define-public python-thinc
+ (package
+ (name "python-thinc")
+ (version "8.1.10")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "thinc" version))
+ (sha256
+ (base32
+ "14drmwa2sh8fqszv1fm2jl4lky1j5yrbkjv89bl49q07vbblhjkc"))))
+ (build-system pyproject-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (add-after 'build 'build-ext
+ (lambda _
+ (invoke "python" "setup.py" "build_ext" "--inplace"
+ "-j" (number->string (parallel-job-count))))))))
+ (propagated-inputs (list python-blis-for-thinc
+ python-catalogue
+ python-confection
+ python-contextvars
+ python-cymem
+ python-dataclasses
+ python-murmurhash
+ python-numpy
+ python-packaging
+ python-preshed
+ python-pydantic
+ python-srsly
+ python-typing-extensions
+ python-wasabi))
+ (native-inputs (list python-cython python-mock python-pytest))
+ (home-page "https://github.com/explosion/thinc")
+ (synopsis "Functional take on deep learning")
+ (description
+ "This package provides a functional take on deep learning, compatible
+with your favorite libraries.")
+ (license license:expat)))
+
(define-public python-threadpoolctl
(package
(name "python-threadpoolctl")
diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 02e0da2ec8..ee6e19fcfe 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -188,6 +188,7 @@
#:use-module (guix build-system meson)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
+ #:use-module (guix build-system pyproject)
#:use-module (guix build-system trivial)
#:use-module (srfi srfi-1)
#:use-module (ice-9 match))
@@ -4039,16 +4040,20 @@ servers. The 4rev1 and 4 versions of IMAP are supported.")
(define-public urlscan
(package
(name "urlscan")
- (version "0.9.10")
+ (version "1.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "urlscan" version))
(sha256
- (base32 "1ir6dxifkd8hv048p65jyz4wyg6ll002fzvbmajpdnvs6mvkj1md"))))
- (build-system python-build-system)
+ (base32 "0rxqdrss34rgnfmbn8ab976dchjbz72wp4ywqrdib119a5xnhqzh"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:tests? #f)) ; No tests.
(propagated-inputs
(list python-urwid))
+ (native-inputs
+ (list python-hatch-vcs python-hatchling))
(home-page "https://github.com/firecat53/urlscan")
(synopsis "View/select the URLs in an email message or file")
(description
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 4e34124469..f89e70c0bb 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -96,6 +96,7 @@
#:use-module (guix build-system meson)
#:use-module (guix build-system ocaml)
#:use-module (guix build-system perl)
+ #:use-module (guix build-system pyproject)
#:use-module (guix build-system python)
#:use-module (guix build-system ruby)
#:use-module (gnu packages algebra)
@@ -1314,13 +1315,12 @@ computations.")
#:phases
(modify-phases %standard-phases
;; This is inspired by two of Debian's patches.
- (add-before 'configure 'add-more-aarch64-support
+ (add-before 'configure 'add-more-architecture-support
(lambda _
(substitute* '("mfhdf/ncgen/ncgen.l"
"mfhdf/ncgen/ncgenyy.c"
"mfhdf/libsrc/netcdf.h.in")
- (("AIX5L64") "__aarch64__"))
- #t))
+ (("AIX5L64") "__aarch64__ || ( __riscv && __riscv_xlen == 64)"))))
(add-before 'configure 'patchbuild
(lambda _
(substitute*
@@ -4682,90 +4682,85 @@ library.")
(define-public blis
(package
(name "blis")
- (version "0.8.1")
+ (version "0.9.0")
(home-page "https://github.com/flame/blis")
(source (origin
(method git-fetch)
(uri (git-reference (url home-page) (commit version)))
(sha256
(base32
- "05ifil6jj9424sr8kmircl8k4bmxnl3y12a79vwj1kxxva5gz50g"))
+ "14v2awhxma6nzas42hq97702672f2njrskqhsv9kl23hvrvci8fm"))
(file-name (git-file-name "blis" version))))
(native-inputs
(list python perl))
(build-system gnu-build-system)
(arguments
- `(#:modules
- ((guix build gnu-build-system)
+ (list
+ #:modules
+ '((guix build gnu-build-system)
(guix build utils)
(srfi srfi-1))
- #:test-target "test"
- #:phases
- (modify-phases %standard-phases
- (replace 'configure
- (lambda* (#:key outputs
- target
- system
- (configure-flags '())
- #:allow-other-keys)
- ;; This is a home-made 'configure' script.
- (let* ((out (assoc-ref outputs "out"))
- ;; Guix-specific support for choosing the configuration
+ #:test-target "test"
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'configure
+ (lambda* (#:key outputs target system (configure-flags '())
+ #:allow-other-keys)
+ ;; This is a home-made 'configure' script.
+ (let* (;; Guix-specific support for choosing the configuration
;; via #:configure-flags: see below for details.
- (config-flag-prefix "--blis-config=")
- (maybe-config-flag (find
- (lambda (s)
- (string-prefix? config-flag-prefix s))
- configure-flags))
- (configure-flags (if maybe-config-flag
- (delete maybe-config-flag
- configure-flags)
+ (config-flag-prefix "--blis-config=")
+ (maybe-config-flag (find
+ (lambda (s)
+ (string-prefix? config-flag-prefix s))
configure-flags))
- ;; Select the "configuration" to build.
- ;; The "generic" configuration is non-optimized but
- ;; portable (no assembly).
- ;; The "x86_64" configuration family includes
- ;; sub-configurations for all supported
- ;; x86_64 microarchitectures.
- ;; BLIS currently lacks runtime hardware detection
- ;; for other architectures: see
- ;; <https://github.com/flame/blis/commit/c534da6>.
- ;; Conservatively, we stick to "generic" on armhf,
- ;; aarch64, and ppc64le for now. (But perhaps
- ;; "power9", "cortexa9", and "cortexa57" might be
- ;; general enough to use?)
- ;; Another approach would be to use the "auto"
- ;; configuration and make this package
- ;; non-substitutable.
- ;; The build is fairly intensive, though.
- (blis-config
- (cond
- (maybe-config-flag
- (substring maybe-config-flag
- (string-length config-flag-prefix)))
- ((string-prefix? "x86_64" (or target system))
- "x86_64")
- (else
- "generic")))
- (configure-args
- `("-p" ,out
- "-d" "opt"
- "--disable-static"
- "--enable-shared"
- "--enable-threading=openmp"
- "--enable-verbose-make"
- ,@configure-flags
- ,blis-config)))
- (format #t "configure args: ~s~%" configure-args)
- (apply invoke
- "./configure"
- configure-args)
- #t)))
- (add-before 'check 'show-test-output
- (lambda _
- ;; By default "make check" is silent. Make it verbose.
- (system "tail -F output.testsuite &")
- #t)))))
+ (configure-flags (if maybe-config-flag
+ (delete maybe-config-flag
+ configure-flags)
+ configure-flags))
+ ;; Select the "configuration" to build.
+ ;; The "generic" configuration is non-optimized but
+ ;; portable (no assembly).
+ ;; The "x86_64" configuration family includes
+ ;; sub-configurations for all supported
+ ;; x86_64 microarchitectures.
+ ;; BLIS currently lacks runtime hardware detection
+ ;; for other architectures: see
+ ;; <https://github.com/flame/blis/commit/c534da6>.
+ ;; Conservatively, we stick to "generic" on armhf,
+ ;; aarch64, and ppc64le for now. (But perhaps
+ ;; "power9", "cortexa9", and "cortexa57" might be
+ ;; general enough to use?)
+ ;; Another approach would be to use the "auto"
+ ;; configuration and make this package
+ ;; non-substitutable.
+ ;; The build is fairly intensive, though.
+ (blis-config
+ (cond
+ (maybe-config-flag
+ (substring maybe-config-flag
+ (string-length config-flag-prefix)))
+ ((string-prefix? "x86_64" (or target system))
+ "x86_64")
+ (else
+ "generic")))
+ (configure-args
+ `("-p" ,#$output
+ "-d" "opt"
+ "--disable-static"
+ "--enable-shared"
+ "--enable-threading=openmp"
+ "--enable-verbose-make"
+ ,@configure-flags
+ ,blis-config)))
+ (format #t "configure args: ~s~%" configure-args)
+ (apply invoke
+ "./configure"
+ configure-args))))
+ (add-before 'check 'show-test-output
+ (lambda _
+ ;; By default "make check" is silent. Make it verbose.
+ (system "tail -F output.testsuite &"))))))
(synopsis "High-performance basic linear algebra (BLAS) routines")
(description
"BLIS is a portable software framework for instantiating high-performance
@@ -4779,6 +4774,47 @@ access to BLIS implementations via traditional BLAS routine calls.")
(define ignorance blis)
+;; It is unfortunate that we cannot just link with the existing blis package.
+(define-public python-blis
+ (package
+ (name "python-blis")
+ (version "0.9.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "blis" version))
+ (sha256
+ (base32
+ "0vrnzk9jx7fcl56q6zpa4w4mxkr4iknxs42fngn9g78zh1kc9skw"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ '(modify-phases %standard-phases
+ (add-after 'build 'build-ext
+ (lambda _
+ (invoke "python" "setup.py" "build_ext" "--inplace"
+ "-j" (number->string (parallel-job-count))))))))
+ (propagated-inputs (list python-numpy))
+ (native-inputs (list python-cython python-pytest))
+ (home-page "https://github.com/explosion/cython-blis")
+ (synopsis "Blis as a self-contained C-extension for Python")
+ (description
+ "This package provides the Blis BLAS-like linear algebra library, as a
+self-contained C-extension for Python.")
+ (license license:bsd-3)))
+
+(define-public python-blis-for-thinc
+ (package
+ (inherit python-blis)
+ (name "python-blis")
+ (version "0.7.8")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "blis" version))
+ (sha256
+ (base32
+ "0mvcif9g69424bk8xiflacxzpvz802ns791v2r8a6fij0sxl3mgp"))))))
+
(define-public openlibm
(package
(name "openlibm")
diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm
index 46170ff31e..00897ea451 100644
--- a/gnu/packages/messaging.scm
+++ b/gnu/packages/messaging.scm
@@ -39,6 +39,7 @@
;;; Copyright © 2022 Giovanni Biscuolo <g@xelera.eu>
;;; Copyright © 2023 Giacomo Leidi <goodoldpaul@autistici.org>
;;; Copyright © 2023 Yovan Naumovski <yovan@gorski.stream>
+;;; Copyright © 2023 gemmaro <gemmaro.dev@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -3085,7 +3086,13 @@ designed for experienced users.")
(file-name (git-file-name name version))
(sha256
(base32
- "0da1ki1v252avy27j6d7snnc0gyq0xa9fypm3qdmxhw2w79d6q36"))))
+ "0da1ki1v252avy27j6d7snnc0gyq0xa9fypm3qdmxhw2w79d6q36"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ ;; TODO: This is fixed upstream in later versions
+ (substitute* "zulip/tests/test_default_arguments.py"
+ (("optional arguments:") "options:"))))))
(build-system python-build-system)
(arguments
`(#:phases
diff --git a/gnu/packages/mpd.scm b/gnu/packages/mpd.scm
index 5005da4e87..9884bc0487 100644
--- a/gnu/packages/mpd.scm
+++ b/gnu/packages/mpd.scm
@@ -118,7 +118,7 @@ interfacing MPD in the C, C++ & Objective C languages.")
(define-public mpd
(package
(name "mpd")
- (version "0.23.12")
+ (version "0.23.13")
(source (origin
(method url-fetch)
(uri
@@ -127,12 +127,13 @@ interfacing MPD in the C, C++ & Objective C languages.")
"/mpd-" version ".tar.xz"))
(sha256
(base32
- "1rq2hyfvwwri3sivab747csza2i096y7m8563rl5mhpchhiadz5p"))))
+ "06fmy68lfrsi5y03l53dnwcynqhwh5f5vhdpbsr8lzmvzgk02sx9"))))
(build-system meson-build-system)
(arguments
(list
#:configure-flags #~(list "-Ddocumentation=enabled"
- "-Dsystemd=enabled")
+ "-Dsystemd=enabled"
+ "-Dtest=true")
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'enable-elogind
@@ -145,7 +146,15 @@ interfacing MPD in the C, C++ & Objective C languages.")
(("systemd_dep = declare_dependency" all)
(string-append "_" all)))
(substitute* "meson.build"
- (("systemd_dep,") "systemd_dep, _systemd_dep,")))))))
+ (("systemd_dep,") "systemd_dep, _systemd_dep,"))))
+ (add-after 'install 'split-package
+ (lambda _
+ ;; The HTML manual accounts for over 40% of the disk
+ ;; space used by the package.
+ (let* ((old (string-append #$output "/share/doc"))
+ (new (string-append #$output:doc "/share/doc")))
+ (mkdir-p (dirname new))
+ (rename-file old new)))))))
(inputs (append
(if (target-linux?) (list liburing) '())
(list ao
@@ -182,7 +191,13 @@ interfacing MPD in the C, C++ & Objective C languages.")
yajl
zlib
zziplib)))
- (native-inputs (list cmake pkg-config python-sphinx))
+ (native-inputs (list pkg-config python-sphinx googletest
+ ;; See test/meson.build for information about these
+ ;; additional dependencies.
+ ;;
+ ;; Used when zziplib feature is enabled.
+ zip))
+ (outputs (list "out" "doc"))
;; Missing optional inputs:
;; libcdio_paranoia
;; libmms
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index 7e4a7d1169..b7369391db 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -3215,7 +3215,7 @@ capabilities, custom envelopes, effects, etc.")
(define-public yoshimi
(package
(name "yoshimi")
- (version "2.2.2.1")
+ (version "2.3.0")
(source
(origin
(method url-fetch)
@@ -3223,7 +3223,7 @@ capabilities, custom envelopes, effects, etc.")
(version-major+minor version)
"/yoshimi-" version ".tar.bz2"))
(sha256
- (base32 "1axrbk1qwsiq77g5957db744481zb2v158psnk2w530wxhls2442"))))
+ (base32 "0rkwz545bipanyl8kcp6rgdqppiad7s0j409a4n8dd97maislsa0"))))
(build-system cmake-build-system)
(arguments
(list
diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm
index 9dfc785f04..2055ed93c7 100644
--- a/gnu/packages/networking.scm
+++ b/gnu/packages/networking.scm
@@ -59,6 +59,7 @@
;;; Copyright © 2023 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2023 Bruno Victal <mirai@makinata.eu>
;;; Copyright © 2023 Yovan Naumovski <yovan@gorski.stream>
+;;; Copyright © 2023 Zheng Junjie <873216071@qq.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -3097,7 +3098,10 @@ The filters can be aggregated and exported in the most common formats.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "07kwika1zdq62s5p5z94xznm77dxjxdg8k0hrg7wygz50151nzmx"))))
+ (base32 "07kwika1zdq62s5p5z94xznm77dxjxdg8k0hrg7wygz50151nzmx"))
+ (modules '((guix build utils)))
+ (snippet '(begin (substitute* '("Makefile")
+ (("-march=native") ""))))))
(build-system gnu-build-system)
(arguments
(list
@@ -3126,6 +3130,7 @@ The filters can be aggregated and exported in the most common formats.")
libpcap
openssl
perl))
+ (properties '((tunable? . #t)))
(home-page "https://github.com/vanhauser-thc/thc-ipv6")
(synopsis "IPv6 security research toolkit")
(description "The THC IPv6 Toolkit provides command-line tools and a library
diff --git a/gnu/packages/nim.scm b/gnu/packages/nim.scm
index 6da382119f..ebcff26c7b 100644
--- a/gnu/packages/nim.scm
+++ b/gnu/packages/nim.scm
@@ -5,6 +5,7 @@
;;; Copyright © 2020 Tanguy Le Carrour <tanguy@bioneland.org>
;;; Copyright © 2022 (unmatched parenthesis <paren@disroot.org>
;;; Copyright © 2022 Trevor Richards <trev@trevdev.ca>
+;;; Copyright © 2023 Gruruya <greytest@disroot.org>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -36,14 +37,14 @@
(define-public nim
(package
(name "nim")
- (version "1.6.6")
+ (version "1.6.12")
(source
(origin
(method url-fetch)
(uri (string-append "https://nim-lang.org/download/"
name "-" version ".tar.xz"))
(sha256
- (base32 "0lm4450ig8k4l3rzxv6kcqji5l1lzicsw76ckwxm0q9qdz713cb7"))))
+ (base32 "1hjd9dxhqzn2ifr988li8q7v6kxpxlcqbdllfd6lsq3knw50pvxc"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; TODO: Investigate tests failures.
@@ -55,6 +56,7 @@
(let ((out (assoc-ref outputs "out")))
(substitute* "install.sh"
(("/usr/local") out)
+ (("/lib/nim") "/lib")
(("/opt/nimble") (string-append out "/share/nimble"))
(("configdir=/etc/nim")
(string-append "configdir=" out "/etc/nim"))))))
@@ -102,7 +104,7 @@
"lib/pure/osproc.nim"
"lib/pure/strscans.nim")
(("/bin/sh") sh))
- (substitute* (find-files "c_code" "stdlib_osproc\\.nim\\.c")
+ (substitute* (find-files "c_code" "@m\\.\\.@slib@spure@sosproc\\.nim\\.c")
(("\"/bin/sh\", 7") (format #f "~s, ~s" sh (string-length sh)))))))
(replace 'build
(lambda* (#:key (parallel-build? #t) #:allow-other-keys)
diff --git a/gnu/packages/notcurses.scm b/gnu/packages/notcurses.scm
index bb0086d4b3..20b2cbb225 100644
--- a/gnu/packages/notcurses.scm
+++ b/gnu/packages/notcurses.scm
@@ -1,5 +1,6 @@
;;; Copyright © 2021 Blake Shaw <blake@nonconstructivism.com>
;;; Copyright © 2022 Marius Bakke <marius@gnu.org>
+;;; Copyright © 2023 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -35,7 +36,7 @@
(define-public notcurses
(package
(name "notcurses")
- (version "3.0.8")
+ (version "3.0.9")
(source
(origin
(method url-fetch)
@@ -48,7 +49,7 @@
"+dfsg.1.orig.tar.xz"))
(file-name (string-append name "-" version ".tar.xz"))
(sha256
- (base32 "1nz32nqh7fn4i06hvl8ndkm0z4g08a6wzhilvv8ggx2hc5axsz89"))))
+ (base32 "1sj2m7sil2i3yw73z15947kypsp0rnapwpwanwzam15lbicc8c3y"))))
(build-system cmake-build-system)
(arguments
`(#:make-flags
@@ -59,6 +60,10 @@
"-DUSE_COVERAGE=off"
;; Do not build HTML documentation
"-DUSE_DOXYGEN=off"
+ ;; Unfortunately this disables the manpages.
+ ,@(if (supported-package? pandoc)
+ '()
+ '("-DUSE_PANDOC=off"))
;; Don't include mouse support
"-DUSE_GPM=off"
;; Use FFmpeg for multimedia support
@@ -66,9 +71,12 @@
;; Follow the Debian Free Software Guidelines, omitting nonfree content.
"-DDFSG_BUILD=ON")))
(native-inputs
- (list pkg-config
- pandoc
- doctest))
+ (append
+ (list pkg-config)
+ (if (supported-package? pandoc)
+ (list pandoc)
+ '())
+ (list doctest)))
(inputs
(list ffmpeg
libdeflate
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 3006631b66..9532fd7187 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013-2023 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2015, 2017, 2020, 2021, 2022 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2017, 2020, 2021, 2022, 2023 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com>
;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
@@ -120,6 +120,7 @@
#:use-module (guix build-system gnu)
#:use-module (guix build-system guile)
#:use-module (guix build-system meson)
+ #:use-module (guix build-system pyproject)
#:use-module (guix build-system python)
#:use-module (guix build-system ruby)
#:use-module (guix build-system trivial)
@@ -917,7 +918,34 @@ transactions from C or Python.")
(sha256
(base32
"1vyk0g0gci4z9psisb8h50zi3j1nwfdg1jw3j76cxv0brln0v3fw"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ ;; These tests require a network connection
+ '(append (map (lambda (file)
+ (string-append "--ignore=binstar_client/" file))
+ (list "tests/test_upload.py"
+ "tests/test_authorizations.py"
+ "tests/test_login.py"
+ "tests/test_whoami.py"
+ "utils/notebook/tests/test_data_uri.py"
+ "utils/notebook/tests/test_base.py"
+ "utils/notebook/tests/test_downloader.py"
+ "inspect_package/tests/test_conda.py"))
+ ;; get_conda_root returns None
+ (list "-k"
+ "not test_conda_root \
+and not test_conda_root_outside_root_environment"))
+ #:phases
+ '(modify-phases %standard-phases
+ (add-after 'unpack 'python3.10-compatibility
+ (lambda _
+ (substitute* "binstar_client/utils/config.py"
+ (("collections.Mapping") "collections.abc.Mapping"))))
+ ;; This is needed for some tests.
+ (add-before 'check 'set-HOME
+ (lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
(list python-clyent python-nbformat python-pyyaml python-requests))
(native-inputs
@@ -926,27 +954,8 @@ transactions from C or Python.")
python-freezegun
python-mock
python-pillow
+ python-pytest
python-pytz))
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- ;; This is needed for some tests.
- (add-before 'check 'set-up-home
- (lambda* _ (setenv "HOME" "/tmp") #t))
- (add-before 'check 'remove-network-tests
- (lambda* _
- ;; Remove tests requiring a network connection
- (let ((network-tests '("tests/test_upload.py"
- "tests/test_authorizations.py"
- "tests/test_login.py"
- "tests/test_whoami.py"
- "utils/notebook/tests/test_data_uri.py"
- "utils/notebook/tests/test_base.py"
- "utils/notebook/tests/test_downloader.py"
- "inspect_package/tests/test_conda.py")))
- (with-directory-excursion "binstar_client"
- (for-each delete-file network-tests)))
- #t)))))
(home-page "https://github.com/Anaconda-Platform/anaconda-client")
(synopsis "Anaconda Cloud command line client library")
(description
@@ -1384,8 +1393,8 @@ environments.")
"0k9zkdyyzir3fvlbcfcqy17k28b51i20rpbjwlx2i1mwd2pw9cxc")))))))
(define-public guix-build-coordinator
- (let ((commit "99981dc3270d79ae0b83f94386e26cc75a7162b3")
- (revision "84"))
+ (let ((commit "c44d485bba42034804beb47afc23005c4e73ea96")
+ (revision "85"))
(package
(name "guix-build-coordinator")
(version (git-version "0" revision commit))
@@ -1396,7 +1405,7 @@ environments.")
(commit commit)))
(sha256
(base32
- "047qqqhpcg5rrzgpp2qlijn6rhlm2ipqhqr1yj1lrnx12dld2kqk"))
+ "1y69yrmmifdp55l5c5b8iiq0llwpggxmq6a4233cdll3bhfxaicl"))
(file-name (string-append name "-" version "-checkout"))))
(build-system gnu-build-system)
(arguments
diff --git a/gnu/packages/password-utils.scm b/gnu/packages/password-utils.scm
index f5f301308a..74e465d21e 100644
--- a/gnu/packages/password-utils.scm
+++ b/gnu/packages/password-utils.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Steve Sprang <scs@stevesprang.com>
-;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015-2023 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2015 Aljosha Papsch <misc@rpapsch.de>
;;; Copyright © 2016 Christine Lemmer-Webber <cwebber@dustycloud.org>
;;; Copyright © 2016 Jessica Tallon <tsyesika@tsyesika.se>
@@ -142,7 +142,7 @@ human.")
(define-public keepassxc
(package
(name "keepassxc")
- (version "2.7.4")
+ (version "2.7.5")
(source
(origin
(method url-fetch)
@@ -150,7 +150,7 @@ human.")
"/releases/download/" version "/keepassxc-"
version "-src.tar.xz"))
(sha256
- (base32 "1knywp38byq0jq9vdyp1ykha9prh09k1y5srwwkr6f503nb5402n"))))
+ (base32 "03002fncllr658mgl5s6an5wnh0a333qnkxad6aw85hqj004iqpd"))))
(build-system cmake-build-system)
(arguments
(list
diff --git a/gnu/packages/patches/agda-categories-remove-incompatible-flags.patch b/gnu/packages/patches/agda-categories-remove-incompatible-flags.patch
new file mode 100644
index 0000000000..dc33af7cf9
--- /dev/null
+++ b/gnu/packages/patches/agda-categories-remove-incompatible-flags.patch
@@ -0,0 +1,31 @@
+From 3d73d59617281c6ae9c19032eae381ff77fd2e65 Mon Sep 17 00:00:00 2001
+Message-Id: <3d73d59617281c6ae9c19032eae381ff77fd2e65.1682841188.git.dev@jpoiret.xyz>
+From: Josselin Poiret <dev@jpoiret.xyz>
+Date: Sun, 30 Apr 2023 09:51:12 +0200
+Subject: [PATCH] Remove stdlib-incompatible flags
+
+From: Josselin Poiret <dev@jpoiret.xyz>
+
+---
+ Makefile | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/Makefile b/Makefile
+index 68846579..ba5923a2 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,6 +1,6 @@
+ .PHONY: test Everything.agda clean
+
+-OTHEROPTS = --auto-inline -Werror
++OTHEROPTS =
+
+ RTSARGS = +RTS -M6G -A128M -RTS ${OTHEROPTS}
+
+
+base-commit: 20397e93a60ed1439ed57ee76ae377c66a5eb8d9
+prerequisite-patch-id: da10df58fa86d08b31174a01db7b9a02377aba55
+prerequisite-patch-id: 508dabd923ba9ac1ee4d8dab6697432b4bd8ba18
+--
+2.39.2
+
diff --git a/gnu/packages/patches/agda-categories-use-find.patch b/gnu/packages/patches/agda-categories-use-find.patch
new file mode 100644
index 0000000000..772352a0cb
--- /dev/null
+++ b/gnu/packages/patches/agda-categories-use-find.patch
@@ -0,0 +1,31 @@
+From 53922aedd81d5111d9007b41235aa12eaa2a863d Mon Sep 17 00:00:00 2001
+Message-Id: <53922aedd81d5111d9007b41235aa12eaa2a863d.1682840933.git.dev@jpoiret.xyz>
+From: Josselin Poiret <dev@jpoiret.xyz>
+Date: Sun, 30 Apr 2023 09:48:21 +0200
+Subject: [PATCH] Use find instead of git ls-tree in Makefile
+
+From: Josselin Poiret <dev@jpoiret.xyz>
+
+---
+ Makefile | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/Makefile b/Makefile
+index 158802d1..68846579 100644
+--- a/Makefile
++++ b/Makefile
+@@ -11,7 +11,7 @@ html: Everything.agda
+ agda ${RTSARGS} --html -i. Everything.agda
+
+ Everything.agda:
+- git ls-tree --full-tree -r --name-only HEAD | grep '^src/[^\.]*.agda' | sed -e 's|^src/[/]*|import |' -e 's|/|.|g' -e 's/.agda//' -e '/import Everything/d' | LC_COLLATE='C' sort > Everything.agda
++ find src -iname '*.agda' | sed -e 's|^src/[/]*|import |' -e 's|/|.|g' -e 's/.agda//' -e '/import Everything/d' | LC_COLLATE='C' sort > Everything.agda
+
+ clean:
+ find . -name '*.agdai' -exec rm \{\} \;
+
+base-commit: 20397e93a60ed1439ed57ee76ae377c66a5eb8d9
+prerequisite-patch-id: da10df58fa86d08b31174a01db7b9a02377aba55
+--
+2.39.2
+
diff --git a/gnu/packages/patches/agda-libdirs-env-variable.patch b/gnu/packages/patches/agda-libdirs-env-variable.patch
new file mode 100644
index 0000000000..3b291358a6
--- /dev/null
+++ b/gnu/packages/patches/agda-libdirs-env-variable.patch
@@ -0,0 +1,49 @@
+From 457bc7438a4f0801dbf332fa2369248bddf5da0c Mon Sep 17 00:00:00 2001
+Message-Id: <457bc7438a4f0801dbf332fa2369248bddf5da0c.1678309546.git.dev@jpoiret.xyz>
+From: Josselin Poiret <dev@jpoiret.xyz>
+Date: Wed, 8 Mar 2023 18:31:52 +0100
+Subject: [PATCH] Add environment variable for library directories
+
+AGDA_LIBDIRS is a new environment colon-separated variable for site libraries.
+Agda will look for .agda-lib files directly inside direct descendants of these.
+---
+ src/full/Agda/Interaction/Library.hs | 16 ++++++++++++++--
+ 1 file changed, 14 insertions(+), 2 deletions(-)
+
+diff --git a/src/full/Agda/Interaction/Library.hs b/src/full/Agda/Interaction/Library.hs
+index 09c1f2a82..774cc3e74 100644
+--- a/src/full/Agda/Interaction/Library.hs
++++ b/src/full/Agda/Interaction/Library.hs
+@@ -323,13 +323,25 @@ getInstalledLibraries overrideLibFile = mkLibM [] $ do
+ raiseErrors' [ LibrariesFileNotFound theOverrideLibFile ]
+ return []
+ Right file -> do
+- if not (lfExists file) then return [] else do
++ siteLibDirs <- liftIO $ fromMaybe [] . fmap splitAtColon . lookup "AGDA_LIBDIRS" <$> getEnvironment
++ siteLibs <- liftIO $ concat <$> mapM findSiteLibs siteLibDirs
++ if not (lfExists file) then parseLibFiles Nothing $ nubOn snd ((0,) <$> siteLibs) else do
+ ls <- liftIO $ stripCommentLines <$> UTF8.readFile (lfPath file)
+ files <- liftIO $ sequence [ (i, ) <$> expandEnvironmentVariables s | (i, s) <- ls ]
+- parseLibFiles (Just file) $ nubOn snd files
++ parseLibFiles (Just file) $ nubOn snd (files ++ fmap (0,) siteLibs)
+ `catchIO` \ e -> do
+ raiseErrors' [ ReadError e "Failed to read installed libraries." ]
+ return []
++ where splitAtColon :: String -> [String]
++ splitAtColon "" = []
++ splitAtColon str = case break (==':') str of
++ (a, _:b) -> a : splitAtColon b
++ (a, "") -> [a]
++ findSiteLibs :: String -> IO [String]
++ findSiteLibs dir = do
++ subDirs <- filterM doesDirectoryExist =<< map (dir </>) <$> listDirectory dir
++ subFiles <- mapM (\dir -> map (dir </>) <$> listDirectory dir) subDirs
++ return $ concatMap (filter (List.isSuffixOf ".agda-lib")) subFiles
+
+ -- | Parse the given library files.
+ --
+
+base-commit: 183534bc41af5a53daf685122997dc98883f2be2
+--
+2.39.1
+
diff --git a/gnu/packages/patches/agda-stdlib-use-runhaskell.patch b/gnu/packages/patches/agda-stdlib-use-runhaskell.patch
new file mode 100644
index 0000000000..21ce16689f
--- /dev/null
+++ b/gnu/packages/patches/agda-stdlib-use-runhaskell.patch
@@ -0,0 +1,28 @@
+From 3dc3c0856906d25bb697a4480a8457a69637cd51 Mon Sep 17 00:00:00 2001
+Message-Id: <3dc3c0856906d25bb697a4480a8457a69637cd51.1682798848.git.dev@jpoiret.xyz>
+From: Josselin Poiret <dev@jpoiret.xyz>
+Date: Sat, 29 Apr 2023 22:06:55 +0200
+Subject: [PATCH] Makefile: use runhaskell instead of cabal
+
+From: Josselin Poiret <dev@jpoiret.xyz>
+
+---
+ GNUmakefile | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/GNUmakefile b/GNUmakefile
+index c5d886e03..f3cb2a1e7 100644
+--- a/GNUmakefile
++++ b/GNUmakefile
+@@ -21,7 +21,7 @@ Everything.agda:
+ # command `cabal install` is needed by cabal-install <= 2.4.*. I did
+ # not found any problem running both commands with different versions
+ # of cabal-install. See Issue #1001.
+- cabal run GenerateEverything
++ runhaskell GenerateEverything
+
+ .PHONY: listings
+ listings: Everything.agda
+--
+2.39.2
+
diff --git a/gnu/packages/patches/d-feet-drop-unused-meson-argument.patch b/gnu/packages/patches/d-feet-drop-unused-meson-argument.patch
new file mode 100644
index 0000000000..5d728d7d60
--- /dev/null
+++ b/gnu/packages/patches/d-feet-drop-unused-meson-argument.patch
@@ -0,0 +1,36 @@
+From 05465d486afdba116dbc22fc22c1e6573aea4f22 Mon Sep 17 00:00:00 2001
+From: Jan Beich <jbeich@FreeBSD.org>
+Date: Mon, 24 Jan 2022 12:11:57 +0000
+Subject: [PATCH] meson: drop unused argument for i18n.merge_file()
+
+Ignored in Meson < 0.60.0, deprecated since 0.60.1 and fatal since 0.61.0.
+
+data/meson.build:15:0: ERROR: Function does not take positional arguments.
+data/meson.build:27:0: ERROR: Function does not take positional arguments.
+---
+ data/meson.build | 2 --
+ 1 file changed, 2 deletions(-)
+
+diff --git a/data/meson.build b/data/meson.build
+index 026bd80..3b03b94 100644
+--- a/data/meson.build
++++ b/data/meson.build
+@@ -13,7 +13,6 @@ desktop_in = configure_file(
+ )
+
+ i18n.merge_file(
+- desktop,
+ type: 'desktop',
+ input: desktop_in,
+ output: '@BASENAME@',
+@@ -25,7 +24,6 @@ i18n.merge_file(
+ appdata = df_namespace + '.appdata.xml'
+
+ i18n.merge_file(
+- appdata,
+ input: appdata + '.in',
+ output: '@BASENAME@',
+ po_dir: po_dir,
+--
+GitLab
+
diff --git a/gnu/packages/patches/hdf4-architectures.patch b/gnu/packages/patches/hdf4-architectures.patch
index 5549f11277..aa71d5a383 100644
--- a/gnu/packages/patches/hdf4-architectures.patch
+++ b/gnu/packages/patches/hdf4-architectures.patch
@@ -21,7 +21,7 @@ Author: Francesco Paolo Lovergine <frankie@debian.org>
#define DFMT_PC 0x4441
#define DFMT_APPLE 0x1111
#define DFMT_APPLE_INTEL 0x4441
-@@ -75,6 +77,12 @@
+@@ -75,6 +77,13 @@
#define DFMT_IA64 0x4441
#define DFMT_LINUX64 0x4441
#define DFMT_POWERPC64 0x1111
@@ -29,12 +29,13 @@ Author: Francesco Paolo Lovergine <frankie@debian.org>
+#define DFMT_ARMV4L 0x4441
+#define DFMT_AARCH64 0x4441
+#define DFMT_X86_64 0x4441
-+#define DFMT_SH 0x4441
-+#define DFMT_SHEB 0x1111
++#define DFMT_SH 0x4441
++#define DFMT_SHEB 0x1111
++#define DFMT_RISCV64 0x4441
/* I/O library constants */
#define UNIXUNBUFIO 1
-@@ -288,7 +296,7 @@ typedef int hdf_pint_t;
+@@ -288,7 +297,7 @@ typedef int hdf_pint_t;
#endif /* IBM6000 */
@@ -43,7 +44,7 @@ Author: Francesco Paolo Lovergine <frankie@debian.org>
#ifndef HP9000
#define HP9000
-@@ -347,6 +355,10 @@ typedef int hdf_pint_t;
+@@ -347,6 +356,10 @@ typedef int hdf_pint_t;
/* what each does */
#define JMEMSYS MEM_ANSI
@@ -54,7 +55,7 @@ Author: Francesco Paolo Lovergine <frankie@debian.org>
#endif /* HP9000 */
-@@ -666,6 +678,410 @@ typedef int hdf_pint_t;
+@@ -670,6 +683,462 @@ typedef int hdf_pint_t;
#endif /* !(defined(__APPLE__)) */
/*-----------------------------------------------------*/
@@ -462,10 +463,62 @@ Author: Francesco Paolo Lovergine <frankie@debian.org>
+
+#endif /* Linux/aarch64 */
+
++#if defined (__linux__) && defined (__riscv) && (__riscv_xlen == 64)
++
++#ifdef GOT_MACHINE
++If you get an error on this line more than one machine type has been defined.
++Please check your Makefile.
++#endif
++#define GOT_MACHINE 1
++
++#include <fcntl.h>
++#include <sys/types.h> /* for unbuffered file I/O */
++#include <sys/stat.h>
++#include <unistd.h>
++#include <ctype.h> /* for character macros */
++
++#define DF_MT DFMT_RISCV64
++
++typedef void VOID;
++typedef void * VOIDP;
++typedef char * _fcd;
++typedef char char8;
++typedef unsigned char uchar8;
++typedef signed char int8;
++typedef unsigned char uint8;
++typedef short int int16;
++typedef unsigned short int uint16;
++typedef int int32;
++typedef unsigned int uint32;
++typedef int intn;
++typedef unsigned int uintn;
++typedef float float32;
++typedef double float64;
++typedef int intf; /* size of INTEGERs in Fortran compiler */
++typedef long hdf_pint_t; /* an integer the same size as a pointer */
++#define FNAME_POST_UNDERSCORE
++#define _fcdtocp(desc) (desc)
++#define FILELIB UNIXBUFIO
++
++#ifndef BIG_LONGS
++#define BIG_LONGS
++#endif
++
++/* JPEG #define's - Look in the JPEG docs before changing - (Q) */
++
++/* Determine the memory manager we are going to use. Valid values are: */
++/* MEM_DOS, MEM_ANSI, MEM_NAME, MEM_NOBS. See the JPEG docs for details on */
++/* what each does */
++#define JMEMSYS MEM_ANSI
++#define HAVE_STDC
++#define INCLUDES_ARE_ANSI
++
++#endif /* Linux/riscv64 */
++
#if defined(NEXT) || defined(NeXT)
#ifndef NEXT
-@@ -928,7 +1344,11 @@ Please check your Makefile.
+@@ -932,7 +1401,11 @@ Please check your Makefile.
#include <sys/file.h> /* for unbuffered i/o stuff */
#include <sys/stat.h>
@@ -478,7 +531,7 @@ Author: Francesco Paolo Lovergine <frankie@debian.org>
typedef void VOID;
typedef void *VOIDP;
typedef char *_fcd;
-@@ -952,6 +1372,11 @@ typedef long hdf_pint_t;
+@@ -956,6 +1429,11 @@ typedef long hdf_pint_t;
#define _fcdtocp(desc) (desc)
#define FILELIB UNIXBUFIO
@@ -490,7 +543,7 @@ Author: Francesco Paolo Lovergine <frankie@debian.org>
/* JPEG #define's - Look in the JPEG docs before changing - (Q) */
/* Determine the memory manager we are going to use. Valid values are: */
-@@ -1097,6 +1522,8 @@ typedef long hdf_pint_t;
+@@ -1101,6 +1579,8 @@ typedef long hdf_pint_t;
#define _fcdtocp(desc) (desc)
#define FILELIB UNIXBUFIO
@@ -499,7 +552,7 @@ Author: Francesco Paolo Lovergine <frankie@debian.org>
/* JPEG #define's - Look in the JPEG docs before changing - (Q) */
/* Determine the memory manager we are going to use. Valid values are: */
-@@ -1111,6 +1538,66 @@ typedef long hdf_pint_t;
+@@ -1115,6 +1595,66 @@ typedef long hdf_pint_t;
#endif /* IA64 */
@@ -573,7 +626,7 @@ Author: Francesco Paolo Lovergine <frankie@debian.org>
/*****************************************************************************/
/* Generally Big-Endian machines */
-#if !defined(INTEL86) && !defined(MIPSEL) && !defined(DEC_ALPHA) && !defined(I860) && !defined(SUN386) && !(defined(__ia64) && !(defined(hpux) || defined(__hpux))) && !defined(__x86_64__)
-+#if !defined(INTEL86) && !defined(MIPSEL) && !defined(DEC_ALPHA) && !defined(I860) && !defined(SUN386) && !(defined(__ia64) && !(defined(hpux) || defined(__hpux))) && !defined(__x86_64__) && !(defined(__powerpc__) && defined(__LITTLE_ENDIAN__)) && !defined(__aarch64__) && !defined(__ARM_EABI__)
++#if !defined(INTEL86) && !defined(MIPSEL) && !defined(DEC_ALPHA) && !defined(I860) && !defined(SUN386) && !(defined(__ia64) && !(defined(hpux) || defined(__hpux))) && !defined(__x86_64__) && !(defined(__powerpc__) && defined(__LITTLE_ENDIAN__)) && !defined(__aarch64__) && !defined(__ARM_EABI__) && !defined(__riscv)
# define UI8_IN DFKnb1b /* Unsigned Integer, 8 bits */
# define UI8_OUT DFKnb1b
# define SI16_IN DFKnb2b /* S = Signed */
diff --git a/gnu/packages/patches/proj-7-initialize-memory.patch b/gnu/packages/patches/proj-7-initialize-memory.patch
new file mode 100644
index 0000000000..81481f9a46
--- /dev/null
+++ b/gnu/packages/patches/proj-7-initialize-memory.patch
@@ -0,0 +1,98 @@
+From 6f1a3c4648bf06862dca0b3725cbb3b7ee0284e3 Mon Sep 17 00:00:00 2001
+From: Even Rouault <even.rouault@spatialys.com>
+Date: Sat, 6 Mar 2021 22:12:27 +0100
+Subject: [PATCH] =?UTF-8?q?gie=5Fself=5Ftests:=20fix=20use=20of=20uninitia?=
+ =?UTF-8?q?lized=20memory=20(fixes=C2=A0#2557)?=
+MIME-Version: 1.0
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
+
+---
+ test/unit/gie_self_tests.cpp | 39 ++++++++++++++++++++++--------------
+ 1 file changed, 24 insertions(+), 15 deletions(-)
+
+diff --git a/test/unit/gie_self_tests.cpp b/test/unit/gie_self_tests.cpp
+index 4244766ebf..92f1c758dc 100644
+--- a/test/unit/gie_self_tests.cpp
++++ b/test/unit/gie_self_tests.cpp
+@@ -268,8 +268,10 @@ TEST_F(gieTest, proj_create_crs_to_crs) {
+ ASSERT_TRUE(P != nullptr);
+ PJ_COORD a, b;
+
+- a.xy.x = 700000.0;
+- a.xy.y = 6000000.0;
++ a.xyzt.x = 700000.0;
++ a.xyzt.y = 6000000.0;
++ a.xyzt.z = 0;
++ a.xyzt.t = HUGE_VAL;
+ b.xy.x = 307788.8761171057;
+ b.xy.y = 5999669.3036037628;
+
+@@ -306,8 +308,10 @@ TEST_F(gieTest, proj_create_crs_to_crs_EPSG_4326) {
+ PJ_COORD a, b;
+
+ // Lat, long degrees
+- a.xy.x = 0.0;
+- a.xy.y = 3.0;
++ a.xyzt.x = 0.0;
++ a.xyzt.y = 3.0;
++ a.xyzt.z = 0;
++ a.xyzt.t = HUGE_VAL;
+
+ b.xy.x = 500000.0;
+ b.xy.y = 0.0;
+@@ -328,8 +332,10 @@ TEST_F(gieTest, proj_create_crs_to_crs_proj_longlat) {
+ PJ_COORD a, b;
+
+ // Long, lat degrees
+- a.xy.x = 3.0;
+- a.xy.y = 0;
++ a.xyzt.x = 3.0;
++ a.xyzt.y = 0;
++ a.xyzt.z = 0;
++ a.xyzt.t = HUGE_VAL;
+
+ b.xy.x = 500000.0;
+ b.xy.y = 0.0;
+@@ -718,9 +724,10 @@ TEST(gie, proj_create_crs_to_crs_PULKOVO42_ETRS89) {
+ proj_destroy(target_crs);
+
+ // Romania
+- c.xyz.x = 45; // Lat
+- c.xyz.y = 25; // Long
+- c.xyz.z = 0;
++ c.xyzt.x = 45; // Lat
++ c.xyzt.y = 25; // Long
++ c.xyzt.z = 0;
++ c.xyzt.t = HUGE_VAL;
+ c = proj_trans(P, PJ_FWD, c);
+ EXPECT_NEAR(c.xy.x, 44.999701238, 1e-9);
+ EXPECT_NEAR(c.xy.y, 24.998474948, 1e-9);
+@@ -740,9 +747,10 @@ TEST(gie, proj_create_crs_to_crs_PULKOVO42_ETRS89) {
+ EXPECT_NEAR(c.xy.x, 45, 1e-8);
+ EXPECT_NEAR(c.xy.y, 25, 1e-8);
+
+- c.xyz.x = 45; // Lat
+- c.xyz.y = 25; // Long
+- c.xyz.z = 0;
++ c.xyzt.x = 45; // Lat
++ c.xyzt.y = 25; // Long
++ c.xyzt.z = 0;
++ c.xyzt.t = HUGE_VAL;
+ proj_trans_generic(P, PJ_FWD, &(c.xyz.x), sizeof(double), 1, &(c.xyz.y),
+ sizeof(double), 1, &(c.xyz.z), sizeof(double), 1,
+ nullptr, 0, 0);
+@@ -783,9 +791,10 @@ TEST(gie, proj_create_crs_to_crs_outside_area_of_use) {
+ EXPECT_EQ(P->fwd, nullptr);
+
+ // Test point outside area of use of both candidate coordinate operations
+- c.xyz.x = 58; // Lat in deg
+- c.xyz.y = 5; // Long in deg
+- c.xyz.z = 0;
++ c.xyzt.x = 58; // Lat in deg
++ c.xyzt.y = 5; // Long in deg
++ c.xyzt.z = 0;
++ c.xyzt.t = HUGE_VAL;
+ c = proj_trans(P, PJ_FWD, c);
+ EXPECT_NEAR(c.xy.x, 64.44444444444444, 1e-9); // Lat in grad
+ EXPECT_NEAR(c.xy.y, 2.958634259259258, 1e-9); // Long in grad
diff --git a/gnu/packages/patches/proot-add-clone3.patch b/gnu/packages/patches/proot-add-clone3.patch
new file mode 100644
index 0000000000..c09d99a743
--- /dev/null
+++ b/gnu/packages/patches/proot-add-clone3.patch
@@ -0,0 +1,114 @@
+From 4699a580ca1aeecd35742494eb0259ee962e89a8 Mon Sep 17 00:00:00 2001
+Message-Id: <4699a580ca1aeecd35742494eb0259ee962e89a8.1685735399.git.dev@jpoiret.xyz>
+From: Josselin Poiret <dev@jpoiret.xyz>
+Date: Fri, 2 Jun 2023 21:42:31 +0200
+Subject: [PATCH] Add clone3.
+
+From: Josselin Poiret <dev@jpoiret.xyz>
+
+---
+ src/syscall/sysnums-arm.h | 1 +
+ src/syscall/sysnums-arm64.h | 1 +
+ src/syscall/sysnums-i386.h | 1 +
+ src/syscall/sysnums-sh4.h | 1 +
+ src/syscall/sysnums-x32.h | 1 +
+ src/syscall/sysnums-x86_64.h | 1 +
+ src/syscall/sysnums.list | 1 +
+ src/tracee/tracee.c | 4 ++++
+ 8 files changed, 11 insertions(+)
+
+diff --git a/src/syscall/sysnums-arm.h b/src/syscall/sysnums-arm.h
+index dfd512f..306e2b1 100644
+--- a/src/syscall/sysnums-arm.h
++++ b/src/syscall/sysnums-arm.h
+@@ -341,4 +341,5 @@ static const Sysnum sysnums_arm[] = {
+ [ 382 ] = PR_renameat2,
+ [ 397 ] = PR_statx,
+ [ 412 ] = PR_utimensat_time64,
++ [ 435 ] = PR_clone3,
+ };
+diff --git a/src/syscall/sysnums-arm64.h b/src/syscall/sysnums-arm64.h
+index dfb9889..65ccc4e 100644
+--- a/src/syscall/sysnums-arm64.h
++++ b/src/syscall/sysnums-arm64.h
+@@ -264,4 +264,5 @@ static const Sysnum sysnums_arm64[] = {
+ [ 275 ] = PR_sched_getattr,
+ [ 276 ] = PR_renameat2,
+ [ 291 ] = PR_statx,
++ [ 435 ] = PR_clone3,
+ };
+diff --git a/src/syscall/sysnums-i386.h b/src/syscall/sysnums-i386.h
+index 3bbb70e..0f3daf2 100644
+--- a/src/syscall/sysnums-i386.h
++++ b/src/syscall/sysnums-i386.h
+@@ -353,4 +353,5 @@ static const Sysnum sysnums_i386[] = {
+ [ 353 ] = PR_renameat2,
+ [ 383 ] = PR_statx,
+ [ 412 ] = PR_utimensat_time64,
++ [ 435 ] = PR_clone3,
+ };
+diff --git a/src/syscall/sysnums-sh4.h b/src/syscall/sysnums-sh4.h
+index 1d3758c..09acca6 100644
+--- a/src/syscall/sysnums-sh4.h
++++ b/src/syscall/sysnums-sh4.h
+@@ -344,4 +344,5 @@ static const Sysnum sysnums_sh4[] = {
+ [ 369 ] = PR_sched_setattr,
+ [ 370 ] = PR_sched_getattr,
+ [ 371 ] = PR_renameat2,
++ [ 435 ] = PR_clone3,
+ };
+diff --git a/src/syscall/sysnums-x32.h b/src/syscall/sysnums-x32.h
+index 448c699..a9fdb48 100644
+--- a/src/syscall/sysnums-x32.h
++++ b/src/syscall/sysnums-x32.h
+@@ -277,6 +277,7 @@ static const Sysnum sysnums_x32[] = {
+ [ 315 ] = PR_sched_getattr,
+ [ 316 ] = PR_renameat2,
+ [ 332 ] = PR_statx,
++ [ 435 ] = PR_clone3,
+ [ 439 ] = PR_faccessat2,
+ [ 512 ] = PR_rt_sigaction,
+ [ 513 ] = PR_rt_sigreturn,
+diff --git a/src/syscall/sysnums-x86_64.h b/src/syscall/sysnums-x86_64.h
+index 92229f8..9840b4a 100644
+--- a/src/syscall/sysnums-x86_64.h
++++ b/src/syscall/sysnums-x86_64.h
+@@ -319,5 +319,6 @@ static const Sysnum sysnums_x86_64[] = {
+ [ 315 ] = PR_sched_getattr,
+ [ 316 ] = PR_renameat2,
+ [ 332 ] = PR_statx,
++ [ 435 ] = PR_clone3,
+ [ 439 ] = PR_faccessat2,
+ };
+diff --git a/src/syscall/sysnums.list b/src/syscall/sysnums.list
+index 1d6e666..2b6c9b2 100644
+--- a/src/syscall/sysnums.list
++++ b/src/syscall/sysnums.list
+@@ -38,6 +38,7 @@ SYSNUM(clock_gettime)
+ SYSNUM(clock_nanosleep)
+ SYSNUM(clock_settime)
+ SYSNUM(clone)
++SYSNUM(clone3)
+ SYSNUM(close)
+ SYSNUM(connect)
+ SYSNUM(creat)
+diff --git a/src/tracee/tracee.c b/src/tracee/tracee.c
+index 58ab7df..9b16f6a 100644
+--- a/src/tracee/tracee.c
++++ b/src/tracee/tracee.c
+@@ -403,6 +403,10 @@ int new_child(Tracee *parent, word_t clone_flags)
+ status = fetch_regs(parent);
+ if (status >= 0 && get_sysnum(parent, CURRENT) == PR_clone)
+ clone_flags = peek_reg(parent, CURRENT, SYSARG_1);
++ else if (status >= 0 && get_sysnum(parent, CURRENT) == PR_clone3)
++ // Look at the first word of the clone_args structure, which
++ // contains the usual clone flags.
++ clone_flags = peek_word(parent, peek_reg(parent, CURRENT, SYSARG_1));
+
+ /* Get the pid of the parent's new child. */
+ status = ptrace(PTRACE_GETEVENTMSG, parent->pid, NULL, &pid);
+
+base-commit: bd5a5f63d72f8210d8cee76195eb9f0749e5bd70
+--
+2.40.1
+
diff --git a/gnu/packages/patches/sbcl-riscv-Make-contribs-build-again.patch b/gnu/packages/patches/sbcl-riscv-Make-contribs-build-again.patch
new file mode 100644
index 0000000000..85b96e1b20
--- /dev/null
+++ b/gnu/packages/patches/sbcl-riscv-Make-contribs-build-again.patch
@@ -0,0 +1,71 @@
+From 8704f528f227f587d0e06dfd2f807aeca7a69a71 Mon Sep 17 00:00:00 2001
+From: Charles Zhang <charleszhang99@yahoo.com>
+Date: Thu, 1 Jun 2023 16:39:26 +0200
+Subject: [PATCH] riscv: Make contribs build again.
+
+The issue was that the LINKAGE_TEMP_REG being NL3 was a C argument
+register, so of course that caused clashing on C call-out, causing
+problems with run-program. Going back to NL7 didn't work either
+because it wasn't getting saved before entry into the trampoline. The
+code here used to have NL7 before the trampoline code was gutted and
+then restored, so I'm wondering how this ever worked before, because
+it definitely did. Pick LIP as the TEMP_REG now because not only does
+it get saved, it's also the least likely thing to get disturbed by
+clobbering.
+
+Fixes #lp2002930.
+
+Also remove assembly routine printing because it doesn't need to be
+part of the build script (unlike the other files in output/ which
+can't trivially be recovered from a built image), and because not all
+disassembler printers have been written on riscv yet.
+---
+ NEWS | 3 +++
+ make-target-2-load.lisp | 4 ----
+ src/runtime/riscv-arch.c | 2 +-
+ 3 files changed, 4 insertions(+), 5 deletions(-)
+
+diff --git a/NEWS b/NEWS
+index 17537ff92..5c0f7777b 100644
+--- a/NEWS
++++ b/NEWS
+@@ -1,5 +1,8 @@
+ ;;;; -*- coding: utf-8; fill-column: 78 -*-
+
++changes relative to sbcl-2.3.5:
++ * bug fix: riscv can build contribs again.
++
+ changes in sbcl-2.3.5 relative to sbcl-2.3.4:
+ * enhancement: Unicode support has been updated to support version 15.0.0 of
+ the Unicode standard, including addition of characters and their collation
+diff --git a/make-target-2-load.lisp b/make-target-2-load.lisp
+index 885ebda74..b9a1a1e36 100644
+--- a/make-target-2-load.lisp
++++ b/make-target-2-load.lisp
+@@ -6,10 +6,6 @@
+ (defvar *compile-files-p* nil)
+ (load (merge-pathnames "src/cold/warm.lisp" *load-pathname*))
+
+-(with-open-file (stream "output/asm-routines.txt" :direction :output
+- :if-does-not-exist :create :if-exists :supersede)
+- (sb-c:dis sb-fasl:*assembler-routines* stream))
+-
+ ;; sb-xref-for-internals is actively harmful to tree-shaking.
+ ;; Remove some symbols to make the hide-packages test pass.
+ #+sb-xref-for-internals
+diff --git a/src/runtime/riscv-arch.c b/src/runtime/riscv-arch.c
+index 6c1994829..062623899 100644
+--- a/src/runtime/riscv-arch.c
++++ b/src/runtime/riscv-arch.c
+@@ -159,7 +159,7 @@ arch_install_interrupt_handlers(void)
+ * Linkage entry size is 8 or 20, because we need 2 instructions for the 32-bit case and we need 3 instructions and an 8 byte address in the 64-bit case.
+ */
+
+-#define LINKAGE_TEMP_REG reg_NL3
++#define LINKAGE_TEMP_REG reg_LIP // Lisp needs to save before entry.
+
+ void arch_write_linkage_table_entry(int index, void *target_addr, int datap)
+ {
+--
+2.40.1
+
diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm
index ec4e4620f8..1f3cc4ba46 100644
--- a/gnu/packages/pdf.scm
+++ b/gnu/packages/pdf.scm
@@ -824,14 +824,14 @@ and based on PDF specification 1.7.")
(define-public mupdf
(package
(name "mupdf")
- (version "1.22.0")
+ (version "1.22.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://mupdf.com/downloads/archive/"
"mupdf-" version "-source.tar.lz"))
(sha256
- (base32 "0ghwam1c1izks1n2zq2pr8z67nvrx4njk5rla86b75l4pw58mmxy"))
+ (base32 "1px73qnazjvmbwf1fab8ad8j1dmiddg1mjb7zg7h9i1vp4bh7c1k"))
(modules '((guix build utils)
(ice-9 ftw)
(srfi srfi-1)))
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 50a586d773..98abf038a5 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -156,12 +156,14 @@
(define-module (gnu packages python-xyz)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages)
- #:use-module (gnu packages algebra)
#:use-module (gnu packages adns)
#:use-module (gnu packages aidc)
+ #:use-module (gnu packages algebra)
#:use-module (gnu packages attr)
#:use-module (gnu packages backup)
+ #:use-module (gnu packages base)
#:use-module (gnu packages bash)
+ #:use-module (gnu packages bdw-gc)
#:use-module (gnu packages check)
#:use-module (gnu packages cmake)
#:use-module (gnu packages compression)
@@ -177,28 +179,28 @@
#:use-module (gnu packages documentation)
#:use-module (gnu packages enchant)
#:use-module (gnu packages file)
- #:use-module (gnu packages fontutils)
#:use-module (gnu packages fonts)
+ #:use-module (gnu packages fontutils)
#:use-module (gnu packages freedesktop)
- #:use-module (gnu packages gdb)
#:use-module (gnu packages gcc)
+ #:use-module (gnu packages gdb)
#:use-module (gnu packages geo)
#:use-module (gnu packages ghostscript)
#:use-module (gnu packages gl)
#:use-module (gnu packages glib)
#:use-module (gnu packages gnome)
#:use-module (gnu packages gnupg)
- #:use-module (gnu packages graphviz)
#:use-module (gnu packages graphics)
+ #:use-module (gnu packages graphviz)
#:use-module (gnu packages gsasl)
#:use-module (gnu packages gstreamer)
#:use-module (gnu packages gtk)
#:use-module (gnu packages haskell-xyz)
#:use-module (gnu packages icu4c)
- #:use-module (gnu packages inkscape)
#:use-module (gnu packages image)
#:use-module (gnu packages image-processing)
#:use-module (gnu packages imagemagick)
+ #:use-module (gnu packages inkscape)
#:use-module (gnu packages java)
#:use-module (gnu packages jupyter)
#:use-module (gnu packages kerberos)
@@ -214,10 +216,10 @@
#:use-module (gnu packages maths)
#:use-module (gnu packages monitoring)
#:use-module (gnu packages multiprecision)
- #:use-module (gnu packages networking)
#:use-module (gnu packages ncurses)
- #:use-module (gnu packages node)
+ #:use-module (gnu packages networking)
#:use-module (gnu packages ninja)
+ #:use-module (gnu packages node)
#:use-module (gnu packages openstack)
#:use-module (gnu packages pcre)
#:use-module (gnu packages pdf)
@@ -236,14 +238,15 @@
#:use-module (gnu packages rdf)
#:use-module (gnu packages readline)
#:use-module (gnu packages regex)
- #:use-module (gnu packages sdl)
#:use-module (gnu packages scanner)
+ #:use-module (gnu packages sdl)
#:use-module (gnu packages search)
#:use-module (gnu packages serialization)
#:use-module (gnu packages shells)
#:use-module (gnu packages sphinx)
#:use-module (gnu packages ssh)
#:use-module (gnu packages swig)
+ #:use-module (gnu packages tcl)
#:use-module (gnu packages terminals)
#:use-module (gnu packages tex)
#:use-module (gnu packages texinfo)
@@ -254,24 +257,20 @@
#:use-module (gnu packages video)
#:use-module (gnu packages web)
#:use-module (gnu packages wxwidgets)
- #:use-module (gnu packages base)
#:use-module (gnu packages xml)
- #:use-module (gnu packages xorg)
#:use-module (gnu packages xdisorg)
- #:use-module (gnu packages tcl)
- #:use-module (gnu packages bdw-gc)
- #:use-module (gnu packages serialization)
+ #:use-module (gnu packages xorg)
#:use-module (guix packages)
- #:use-module (guix download)
- #:use-module (guix git-download)
- #:use-module (guix hg-download)
- #:use-module (guix gexp)
- #:use-module (guix utils)
- #:use-module (guix build-system gnu)
#:use-module (guix build-system cargo)
#:use-module (guix build-system cmake)
+ #:use-module (guix build-system gnu)
#:use-module (guix build-system pyproject)
#:use-module (guix build-system python)
+ #:use-module (guix download)
+ #:use-module (guix hg-download)
+ #:use-module (guix git-download)
+ #:use-module (guix gexp)
+ #:use-module (guix utils)
#:use-module (srfi srfi-1)
#:use-module (srfi srfi-26))
@@ -1342,15 +1341,10 @@ threads.")
(sha256
(base32
"0bwkvjpjfyi9dgszzad9aww2vc00w3bczjnbifi92cp7wch2l923"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm python-tornado python-typeguard
+ (list python-setuptools-scm python-tornado-6 python-typeguard
python-pytest))
- (arguments
- (list #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda _ (invoke "pytest" "-vv"))))))
(home-page "https://github.com/jd/tenacity")
(synopsis "Retrying library for python")
(description "Tenacity is a general-purpose python library to simplify the
@@ -2693,48 +2687,32 @@ class.")
(define-public python-can
(package
(name "python-can")
- (version "4.0.0")
+ (version "4.2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "python-can" version))
(sha256
(base32
- "0pcbdgdw94lc2sxd56w6wdsshrs9dd5d3wp0x4sfd0drzx32inar"))))
- (build-system python-build-system)
+ "1w5sdzxivpd3pw4pypwnjlksvfimdb93qnlddbrh5f13flhsgg8g"))))
+ (build-system pyproject-build-system)
(arguments
- `(#:phases (modify-phases %standard-phases
- (add-after 'unpack 'relax-version-requirements
- (lambda _
- (substitute* "setup.py"
- (("mock~=2\\.0") "mock")
- (("coverage<5") "coverage")
- (("pytest~=4\\.6") "pytest")
- (("pytest-timeout~=1\\.3") "pytest-timeout")
- (("pytest-cov.*") "pytest-cov\n")
- (("hypothesis~=4\\.56") "hypothesis"))))
- (add-after 'unpack 'fix-broken-tests
- ;; The tests try to run two scripts it expects should be
- ;; in PATH, but they aren't at this time (see:
- ;; https://github.com/hardbyte/python-can/issues/805).
- (lambda _
- (substitute* "test/test_scripts.py"
- (("\"can_logger\\.py --help\"") "")
- (("\"can_player\\.py --help\"") ""))))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv" "test"
- ;; Disable tests which require specific CAN
- ;; drivers we have no package for in Guix.
- "--ignore" "test/test_interface_canalystii.py"
- ;; These tests fail with "OSError: [Errno 19]
- ;; No such device".
- "-k" "not BasicTestUdpMulticastBusIPv")))))))
+ (list
+ #:test-flags
+ #~(list
+ ;; TODO: Check if it could be packed:
+ ;; https://github.com/projectgus/python-canalystii
+ ;;
+ ;; Disable tests which require specific CAN drivers we have no
+ ;; package for in Guix.
+ "--ignore" "test/test_interface_canalystii.py"
+ ;; These tests fail with "OSError: [Errno 19] No such device".
+ "-k" "not BasicTestUdpMulticastBusIPv")))
(propagated-inputs
(list python-msgpack python-typing-extensions python-wrapt))
(native-inputs
- (list python-codecov
+ (list ;; python-canalystii ; Not packed yet
+ python-codecov
python-coverage
python-future
python-hypothesis
@@ -4419,6 +4397,58 @@ with sensible defaults out of the box.")
clickgen is using @code{anicursorgen} and @code{xcursorgen} under the hood.")
(license license:expat)))
+(define-public python-clickhouse-connect
+ (package
+ (name "python-clickhouse-connect")
+ (version "0.6.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ClickHouse/clickhouse-connect")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1s0lk7xdq8f351cmpbp6jidqi5zdazrdba7w7fxph0w8sd74amry"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ ;; All these tests require docker-compose
+ '(list "--ignore-glob=tests/integration_tests/*")
+ #:phases
+ '(modify-phases %standard-phases
+ (add-after 'unpack 'patch-pyproject
+ (lambda _
+ ;; Our version of pytest is confused by this field.
+ (substitute* "pyproject.toml"
+ (("^env_files.*") ""))))
+ (add-before 'check 'build-extensions
+ (lambda _
+ ;; Cython extensions have to be built before running the tests.
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
+ (propagated-inputs
+ (list python-arrow
+ python-certifi
+ python-lz4
+ python-numpy
+ python-orjson
+ python-pandas
+ python-pytz
+ python-sqlalchemy
+ python-urllib3
+ python-zstandard))
+ (native-inputs
+ (list python-cython
+ python-pytest))
+ (home-page "https://github.com/ClickHouse/clickhouse-connect")
+ (synopsis
+ "ClickHouse database core driver for Python, Pandas, and Superset")
+ (description
+ "This package provides a high performance core database driver for
+connecting ClickHouse to Python, Pandas, and Superset.")
+ (license license:asl2.0)))
+
(define-public python-cligj
(package
(name "python-cligj")
@@ -9411,6 +9441,28 @@ all the newest features of the standard @code{pathlib} can be used also on
older Python versions.")
(license license:expat)))
+(define-public python-pathy
+ (package
+ (name "python-pathy")
+ (version "0.10.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "pathy" version))
+ (sha256
+ (base32
+ "12v196q3rai33cfzrmb9pqfqv7ailngssjdrzdf8gzym9hdygmjc"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs
+ (list python-dataclasses python-smart-open python-typer))
+ (native-inputs (list python-mock python-pytest))
+ (home-page "https://github.com/justindujardin/pathy")
+ (synopsis "Path interface for local and cloud bucket storage")
+ (description "Pathy is a python package (with type annotations) for
+working with Cloud Bucket storage providers using a @code{pathlib} interface.
+It provides @code{pathlib.Path} subclasses for local and cloud bucket
+storage.")
+ (license license:asl2.0)))
+
(define-public python-importlib-resources
(package
(name "python-importlib-resources")
@@ -10305,6 +10357,36 @@ you're careful. The @code{backcall} package provides a way of specifying the
callback signature using a prototype function.")
(license license:bsd-3)))
+(define-public python-pubmed-parser
+ (package
+ (name "python-pubmed-parser")
+ (version "0.3.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/titipata/pubmed_parser")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "195cmjjg7xdwjj5455h78q7jnxnccia07a19xwndhlkxv7vk9v60"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs
+ (list python-lxml
+ python-numpy
+ python-requests
+ python-six
+ python-unidecode))
+ (native-inputs
+ (list python-pytest
+ python-pytest-cov))
+ (home-page "https://github.com/titipata/pubmed_parser")
+ (synopsis "Parser for Pubmed Open-Access Subset and MEDLINE XML repository")
+ (description
+ "This package provides a Python parser for Pubmed Open-Access Subset and
+MEDLINE XML repository.")
+ (license license:expat)))
+
(define-public python-pure-eval
(package
(name "python-pure-eval")
@@ -15351,6 +15433,27 @@ provide an easy to use, pythonic and comprehensive Python interface to dialog.
This allows one to make simple text-mode user interfaces on Unix-like systems")
(license license:lgpl2.1)))
+(define-public python-confection
+ (package
+ (name "python-confection")
+ (version "0.0.4")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "confection" version))
+ (sha256
+ (base32
+ "1ksfn10zhnpkcj3y0c3xs4dznvc062bk62x4c3ig0dd6bn4gbpdi"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-pydantic python-srsly
+ python-typing-extensions))
+ (native-inputs (list python-pytest))
+ (home-page "https://github.com/explosion/confection")
+ (synopsis "Config system for Python")
+ (description "Confection is a lightweight library that offers a
+configuration system letting you conveniently describe arbitrary trees of
+objects.")
+ (license license:expat)))
+
(define-public python-configobj
(package
(name "python-configobj")
@@ -16408,7 +16511,7 @@ enhancements to optimization and data fitting problems.")
python-packaging
python-pillow
python-pyyaml
- python-tornado
+ python-tornado-6
python-typing-extensions))
(native-inputs
(list python-beautifulsoup4
@@ -17235,19 +17338,23 @@ checking library.")
(define-public python-codespell
(package
(name "python-codespell")
- (version "2.1.0")
+ (version "2.2.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "codespell" version))
(sha256
- (base32 "1r9y714cz8m894rxp7pyvicr1lw2iid24vz6fxbl5wzy8ibgxlqr"))))
- (build-system python-build-system)
+ (base32 "0fp8ihlj8q23qdfryj5pq8srl85vn8k8p6gq3zg9qz957i3j0ihb"))))
+ (build-system pyproject-build-system)
(inputs
(list python-chardet))
(native-inputs
- (list python-check-manifest python-flake8 python-pytest
- python-pytest-cov python-pytest-dependency))
+ (list python-flake8
+ python-pygments
+ python-pytest
+ python-pytest-cov
+ python-pytest-dependency
+ python-tomli))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -20481,6 +20588,59 @@ from the header, as well as section details and data available.")
Mustache templating language renderer.")
(license license:expat)))
+(define-public python-duckdb
+ (package
+ (name "python-duckdb")
+ (version "0.8.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "duckdb" version))
+ (sha256
+ (base32
+ "13y1gs565q51li5fi9m7fpf0sqns8frsaii6v95acwjhmdds73f6"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ '(list "--ignore=tests/slow/test_h2oai_arrow.py"
+ ;; Don't install anything, thank you.
+ "-k" "not test_install_non_existent_extension")
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; Tests need this
+ (add-before 'check 'set-HOME
+ (lambda _ (setenv "HOME" "/tmp")))
+ (add-before 'build 'set-version
+ (lambda _
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)
+ (substitute* "setup.py"
+ (("\"setuptools_scm<7.0.0\",") ""))))
+ ;; Later versions of pybind replace "_" with "const_name".
+ (add-after 'unpack 'pybind-compatibility
+ (lambda _
+ (with-directory-excursion "src/include/duckdb_python"
+ (substitute* '("python_objects.hpp"
+ "pyfilesystem.hpp"
+ "pybind11/conversions/pyconnection_default.hpp")
+ (("const_name") "_"))))))))
+ (native-inputs
+ (list pybind11
+ python-fsspec
+ python-google-cloud-storage
+ python-mypy
+ python-numpy
+ python-pandas
+ python-psutil
+ python-pyarrow
+ python-pytest
+ python-pytest-runner
+ python-setuptools-scm))
+ (home-page "https://www.duckdb.org")
+ (synopsis "DuckDB embedded database")
+ (description "DuckDB is an in-process SQL OLAP database management
+system.")
+ (license license:expat)))
+
(define-public python-dulwich
(package
(name "python-dulwich")
@@ -26647,32 +26807,29 @@ the syntactic logic to configure and launch jobs in an execution environment.")
(define-public python-flit
(package
(name "python-flit")
- (version "3.5.1")
+ (version "3.8.0") ;same as python-flit-core
(source
(origin
(method url-fetch)
(uri (pypi-uri "flit" version))
(sha256
- (base32 "04152qj46sqbnlrj7ch9p7svjrrlpzbk0qr39g2yr0s4f5vp6frf"))))
- (build-system python-build-system)
+ (base32 "0dz9sp2zlhkmk6sm5gapbbb30f7xq3n3jn5zxx5pkp25ppsaiwnh"))))
+ (build-system pyproject-build-system)
(arguments
(list
+ #:test-flags
+ ;; These tests fail when FLIT_NO_NETWORK is set
+ '(list "-k" "not test_invalid_classifier \
+and not test_install_requires \
+and not test_install_requires_extra \
+and not test_validate_classifiers_private")
#:phases
#~(modify-phases %standard-phases
- ;; XXX: PEP 517 manual build copied from python-isort.
- (replace 'build
- (lambda _
- (invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
- (replace 'check
+ (add-before 'check 'pre-check
(lambda* (#:key tests? inputs outputs #:allow-other-keys)
(when tests?
(setenv "HOME" "/tmp")
- (setenv "FLIT_NO_NETWORK" "1"))))
- (replace 'install
- (lambda _
- (let ((whl (car (find-files "dist" "\\.whl$"))))
- (invoke "pip" "--no-cache-dir" "--no-input"
- "install" "--no-deps" "--prefix" #$output whl)))))))
+ (setenv "FLIT_NO_NETWORK" "1")))))))
(propagated-inputs
(list python-pypa-build
python-tomli-w
@@ -31767,6 +31924,40 @@ uses the parsed regular expression, so you get a much more accurate result
than trying to just split strings.")
(license license:asl2.0)))
+(define-public python-srsly
+ (package
+ (name "python-srsly")
+ (version "2.4.6")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "srsly" version))
+ (sha256
+ (base32
+ "0vsafkvk4g0p5m0dqrczqvlyza837i20xxmb24rrqk5s78r1zd27"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'build-extensions
+ (lambda _
+ ;; Cython extensions have to be built before running the tests.
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
+ (propagated-inputs (list python-catalogue))
+ (native-inputs
+ (list python-cython
+ python-pytest
+ python-pytest-timeout
+ python-mock
+ python-numpy
+ python-psutil))
+ (home-page "https://github.com/explosion/srsly")
+ (synopsis "Serialization utilities for Python")
+ (description "This package bundles some of the best Python serialization
+libraries into one standalone package, with a high-level API that makes it
+easy to write code that's correct across platforms and Pythons.")
+ (license license:expat)))
+
(define-public python-pyperf
(package
(name "python-pyperf")
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 450bf933db..e025653338 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2866,14 +2866,16 @@ certain criterion, e.g., it contains a certain regular file.")
(define-public r-rmarkdown
(package
(name "r-rmarkdown")
- (version "2.21")
+ (version "2.22")
(source
(origin
(method url-fetch)
(uri (cran-uri "rmarkdown" version))
(sha256
- (base32 "0a5czn18clfnw0a9nd5v98ah4h47i32423s6jdf126ni4aj20ny2"))))
- (properties `((upstream-name . "rmarkdown")))
+ (base32 "1f47ccph09ilqlr0bnyrxkadja4ddp4klvb933aws3rya0cmaqy6"))))
+ (properties
+ `((upstream-name . "rmarkdown")
+ (updater-extra-propagated-inputs . ("pandoc"))))
(build-system r-build-system)
(propagated-inputs
(list r-bslib
@@ -4172,13 +4174,13 @@ vignettes.")
(define-public r-mvtnorm
(package
(name "r-mvtnorm")
- (version "1.1-3")
+ (version "1.2-0")
(source (origin
(method url-fetch)
(uri (cran-uri "mvtnorm" version))
(sha256
(base32
- "0j14q2bkc14v35s5k03sw44zsssrd2qjljlwzj014qxs74hk0kpz"))))
+ "1q1bmsvd10iz003xlsd40dj5bhmy2069p88ydf9f4gj56mysnlpm"))))
(build-system r-build-system)
(native-inputs
(list gfortran))
@@ -4191,13 +4193,13 @@ t-probabilities, quantiles, random deviates and densities.")
(define-public r-matrixstats
(package
(name "r-matrixstats")
- (version "0.63.0")
+ (version "1.0.0")
(source (origin
(method url-fetch)
(uri (cran-uri "matrixStats" version))
(sha256
(base32
- "0pqz6mn5l7inh464yj45i6rf8ycab0zdvvjczwsv0bkl442bc060"))))
+ "0vxd7g1fm4x0f72bs1xfik1d4yklvpjdyg1hpx86pl8fwr86i1wl"))))
(properties `((upstream-name . "matrixStats")))
(build-system r-build-system)
(arguments
@@ -4505,14 +4507,14 @@ data behind them) can be viewed and modified in a web browser.")
(define-public r-biased-urn
(package
(name "r-biased-urn")
- (version "2.0.9")
+ (version "2.0.10")
(source
(origin
(method url-fetch)
(uri (cran-uri "BiasedUrn" version))
(sha256
(base32
- "02bb81x1hfvhm6qlcvp88bdpm1fhqak9cjbqz1r7fhg2qfxjpims"))))
+ "0jv0zvz1zs34h12zdgn3lqmn7hfkk2z6fkwbd9mlyddf34rkvfqv"))))
(properties `((upstream-name . "BiasedUrn")))
(build-system r-build-system)
(home-page "https://www.agner.org/random/")
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index ab19c2dd8c..3b6af31b76 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -3475,37 +3475,6 @@ and JACK.")
(home-page "https://obsproject.com")
(license license:gpl2+)))
-(define-public obs-spectralizer
- (package
- (name "obs-spectralizer")
- (version "1.3.3")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/univrsal/spectralizer")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
-
- ;; Remove bundled Windows DLLs.
- (snippet '(delete-file-recursively "fftw3"))
- (modules '((guix build utils)))
-
- (sha256
- (base32
- "0q75cnyqydpvfda51zm9gxqj3wqr99ad0lxzjhw0ld67qvj1ag6i"))))
- (build-system cmake-build-system)
- (arguments
- `(#:tests? #f
- #:configure-flags
- (list "-DGLOBAL_INSTALLATION=ON" "-DUSE_CMAKE_LIBDIR=ON")))
- (inputs (list obs fftw))
- (home-page "https://github.com/univrsal/spectralizer")
- (synopsis "OBS plugin for audio visualization")
- (description "This OBS plugins allows you to vizualize MPD and internal
-OBS audio sources.")
- (license license:gpl2)))
-
(define-public obs-websocket
(package
(name "obs-websocket")
diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm
index 500461fecf..af070526ec 100644
--- a/gnu/packages/vpn.scm
+++ b/gnu/packages/vpn.scm
@@ -20,7 +20,7 @@
;;; Copyright © 2021 jgart <jgart@dismail.de>
;;; Copyright © 2022 Josselin Poiret <josselin.poiret@protonmail.ch>
;;; Copyright © 2022 Lu hui <luhux76@gmail.com>
-;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
+;;; Copyright © 2022, 2023 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2022 Jean-Pierre De Jesus DIAZ <me@jeandudey.tech>
;;; Copyright © 2022 Arun Isaac <arunisaac@systemreboot.net>
;;;
@@ -677,35 +677,31 @@ the user specifically asks to proxy, so the @dfn{VPN} interface no longer
(define-public openconnect
(package
- (name "openconnect")
- (version "9.01")
- (source (origin
- (method url-fetch)
- (uri (string-append "ftp://ftp.infradead.org/pub/openconnect/"
- "openconnect-" version ".tar.gz"))
- (sha256
- (base32 "1iz4j00031a5ircrx30lkiwf58yl9kc827m4ssck4yg963wgmmxk"))))
- (build-system gnu-build-system)
- (propagated-inputs
- (list libxml2 gnutls zlib))
- (inputs
- (list lz4 vpnc-scripts))
- (native-inputs
- `(("gettext" ,gettext-minimal)
- ("pkg-config" ,pkg-config)))
- (arguments
- `(#:configure-flags
- `(,(string-append "--with-vpnc-script="
- (assoc-ref %build-inputs "vpnc-scripts")
- "/etc/vpnc/vpnc-script"))))
- (synopsis "Client for Cisco VPN")
- (description
- "OpenConnect is a client for Cisco's AnyConnect SSL VPN, which is
-supported by the ASA5500 Series, by IOS 12.4(9)T or later on Cisco SR500,
-870, 880, 1800, 2800, 3800, 7200 Series and Cisco 7301 Routers,
-and probably others.")
- (license license:lgpl2.1)
- (home-page "https://www.infradead.org/openconnect/")))
+ (name "openconnect")
+ (version "9.12")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "ftp://ftp.infradead.org/pub/openconnect/"
+ "openconnect-" version ".tar.gz"))
+ (sha256
+ (base32 "0gj1nba1pygvcjasqdakxxnx94dwx3l4hzj0dvipbzjdmbixrgm2"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list #:configure-flags
+ #~(list (string-append "--with-vpnc-script="
+ (search-input-file %build-inputs
+ "etc/vpnc/vpnc-script")))))
+ (native-inputs (list gettext-minimal pkg-config))
+ (inputs (list lz4 vpnc-scripts))
+ (propagated-inputs (list libxml2 gnutls zlib))
+ (synopsis "Client for Cisco VPN")
+ (description
+ "OpenConnect is a client for Cisco's AnyConnect SSL VPN, which is
+supported by the ASA5500 Series, by IOS 12.4(9)T or later on Cisco SR500, 870,
+880, 1800, 2800, 3800, 7200 Series and Cisco 7301 Routers, and probably
+others.")
+ (license license:lgpl2.1)
+ (home-page "https://www.infradead.org/openconnect/")))
(define-public openconnect-sso
(package
diff --git a/gnu/packages/web-browsers.scm b/gnu/packages/web-browsers.scm
index 1fe5ef5c82..7d1f61be53 100644
--- a/gnu/packages/web-browsers.scm
+++ b/gnu/packages/web-browsers.scm
@@ -724,7 +724,7 @@ is fully configurable and extensible in Common Lisp.")
(define-public lagrange
(package
(name "lagrange")
- (version "1.15.9")
+ (version "1.16.3")
(source
(origin
(method url-fetch)
@@ -732,7 +732,7 @@ is fully configurable and extensible in Common Lisp.")
(string-append "https://git.skyjake.fi/skyjake/lagrange/releases/"
"download/v" version "/lagrange-" version ".tar.gz"))
(sha256
- (base32 "19pn5nnlskyj7w61s9vg5c0vb0hpdyalj3m8znvs4lgw3463ijs3"))
+ (base32 "1kmhxacka0rixxv1r5vqjhxmdxll73b5w5ja18m1qpbk2sk00bg8"))
(modules '((guix build utils)))
(snippet
'(begin
diff --git a/gnu/packages/wxwidgets.scm b/gnu/packages/wxwidgets.scm
index e6194e6f50..d0c323e30c 100644
--- a/gnu/packages/wxwidgets.scm
+++ b/gnu/packages/wxwidgets.scm
@@ -112,6 +112,7 @@
libsecret
libsm
libtiff
+ libxtst ;for wxUIActionSimulator
mesa
pcre2
sdl2
diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm
index 462ac082f5..b8671d1cf6 100644
--- a/gnu/packages/xdisorg.scm
+++ b/gnu/packages/xdisorg.scm
@@ -41,7 +41,7 @@
;;; Copyright © 2020 Gabriel Arazas <foo.dogsquared@gmail.com>
;;; Copyright © 2020 James Smith <jsubuntuxp@disroot.org>
;;; Copyright © 2020 B. Wilson <elaexuotee@wilsonb.com>
-;;; Copyright © 2020, 2021 Zheng Junjie <873216071@qq.com>
+;;; Copyright © 2020, 2021, 2023 Zheng Junjie <873216071@qq.com>
;;; Copyright © 2021, 2022, 2023 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2021, 2022 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2021 Xinglu Chen <public@yoctocell.xyz>
@@ -768,7 +768,28 @@ and Matrox.")
(base32
"1q700h9dqcm3zl6c3gj0qxxjcx6ibw2c51wjijydhwdcm26v5mqm"))))
(build-system gnu-build-system)
- (arguments '(#:configure-flags '("--disable-static")))
+ (arguments
+ `(#:configure-flags
+ '("--disable-static")
+ ,@(if (and (target-riscv64?)
+ (%current-target-system))
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'update-config-scripts
+ (lambda* (#:key inputs native-inputs #:allow-other-keys)
+ ;; Replace outdated config.guess and config.sub.
+ (for-each (lambda (file)
+ (install-file
+ (search-input-file
+ (or native-inputs inputs)
+ (string-append "/bin/" file)) "./config-aux"))
+ '("config.guess" "config.sub"))))))
+ '())))
+ (native-inputs
+ (if (and (target-riscv64?)
+ (%current-target-system))
+ (list config)
+ '()))
(home-page "https://bitmath.org/code/mtdev/")
(synopsis "Multitouch protocol translation library")
(description "Mtdev is a stand-alone library which transforms all
diff --git a/gnu/packages/xfce.scm b/gnu/packages/xfce.scm
index 2eb90ed4b2..31dc750101 100644
--- a/gnu/packages/xfce.scm
+++ b/gnu/packages/xfce.scm
@@ -185,7 +185,7 @@ storage system.")
(define-public libxfce4ui
(package
(name "libxfce4ui")
- (version "4.18.3")
+ (version "4.18.4")
(source (origin
(method url-fetch)
(uri (string-append "https://archive.xfce.org/src/xfce/"
@@ -193,7 +193,7 @@ storage system.")
name "-" version ".tar.bz2"))
(sha256
(base32
- "1g8a067xbazgh0qc25nc7k1zc6aqmznhh4vy5wnn3aykxrpa98xg"))))
+ "0k6b8al8cy2w5zi8iywkzjsz2cgiz9r8ir2dflzxw9kdgiwzxvl7"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
@@ -398,7 +398,7 @@ management D-Bus specification.")
(define-public xfce4-panel
(package
(name "xfce4-panel")
- (version "4.18.3")
+ (version "4.18.4")
(source (origin
(method url-fetch)
(uri (string-append "https://archive.xfce.org/src/xfce/"
@@ -406,7 +406,7 @@ management D-Bus specification.")
name "-" version ".tar.bz2"))
(sha256
(base32
- "06sy6vjydx1p8rx8z94ya6szvmvyarijl5x0pm5ij4cqbihviq2a"))
+ "0m7vmk7rc2sjfqba0flgnw77kn1j222xqs7r86bpg8sf1614yc1j"))
(patches (search-patches "xfce4-panel-plugins.patch"))))
(build-system gnu-build-system)
(arguments
@@ -498,7 +498,7 @@ matching them against regular expressions.")
(define-public xfce4-pulseaudio-plugin
(package
(name "xfce4-pulseaudio-plugin")
- (version "0.4.6")
+ (version "0.4.7")
(source
(origin
(method url-fetch)
@@ -507,7 +507,7 @@ matching them against regular expressions.")
(version-major+minor version) "/"
"xfce4-pulseaudio-plugin-" version ".tar.bz2"))
(sha256
- (base32 "05k02ilvffddgbp6in9wpjvg6vzlcxxw09nmj29hzba44klc04bf"))))
+ (base32 "0b4fjvrrah0b97cbv8ds7r6cwnj392ya2r7703ixf724f43hkpah"))))
(build-system gnu-build-system)
(native-inputs
(list intltool pkg-config dbus-glib dbus))
@@ -630,7 +630,7 @@ your system in categories, so you can quickly find and launch them.")
(define-public xfce4-session
(package
(name "xfce4-session")
- (version "4.18.2")
+ (version "4.18.3")
(source (origin
(method url-fetch)
(uri (string-append "https://archive.xfce.org/src/xfce/"
@@ -638,7 +638,7 @@ your system in categories, so you can quickly find and launch them.")
"xfce4-session-" version ".tar.bz2"))
(sha256
(base32
- "12pbppyhg0jdwswwk59fffh2n5ckpfvwc999zkg1l2f2skl7zzq1"))
+ "1v4lfgz7az8iqp01a1ww8sxxjfmr676bijhrhw4r6r7cjvh96brq"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -1222,7 +1222,7 @@ system resources, while still being visually appealing and user friendly.")
(define-public xfce4-power-manager
(package
(name "xfce4-power-manager")
- (version "4.18.1")
+ (version "4.18.2")
(source (origin
(method url-fetch)
(uri (string-append "https://archive.xfce.org/src/xfce/"
@@ -1230,7 +1230,7 @@ system resources, while still being visually appealing and user friendly.")
"xfce4-power-manager-" version ".tar.bz2"))
(sha256
(base32
- "00zz9bhzsf2vww8mym9c093sz7va5716qb6kvdvn6ldp9h6b223b"))))
+ "0kfzvhb1hnr16fcplm7bdpp4fcxr3irzq3w4q0lpbc5n6kaqyq71"))))
(build-system gnu-build-system)
(native-inputs
(list pkg-config intltool))
@@ -1453,7 +1453,7 @@ of data to either CD/DVD/BD.")
(define-public xfce4-screenshooter
(package
(name "xfce4-screenshooter")
- (version "1.10.3")
+ (version "1.10.4")
(source (origin
(method url-fetch)
(uri (string-append "https://archive.xfce.org/src/apps/"
@@ -1463,7 +1463,7 @@ of data to either CD/DVD/BD.")
version ".tar.bz2"))
(sha256
(base32
- "061qixpz8krvpixs6ickl9ha5m0pb078rdd5fjifrkxy8yc1am54"))))
+ "1534h1a3a8b9pl20zpccaifrlsrbsihdcdjndn9nmqalgrl9kwd2"))))
(build-system gnu-build-system)
(native-inputs
(list pkg-config intltool
@@ -1482,7 +1482,7 @@ A plugin for the Xfce panel is also available.")
(define-public xfce4-screensaver
(package
(name "xfce4-screensaver")
- (version "4.18.1")
+ (version "4.18.2")
(source (origin
(method url-fetch)
(uri (string-append "https://archive.xfce.org/src/apps/"
@@ -1492,7 +1492,7 @@ A plugin for the Xfce panel is also available.")
version ".tar.bz2"))
(sha256
(base32
- "0p2an3g5jlhmr60if319cfgkqacziym52csj7dfwq64assmyhcdp"))))
+ "161bdsvkbknaf9fpz4b1r4amnm72hzfmx9c6krg2396k2k2d5z74"))))
(build-system gnu-build-system)
(arguments
`(#:phases
diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index d6c388739f..e1a7cf96f9 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -34,6 +34,7 @@
;;; Copyright © 2021 Maxime Devos <maximedevos@telenet.be>
;;; Copyright © 2021 qblade <qblade@protonmail.com>
;;; Copyright © 2021 Lu Hui <luhux76@gmail.com>
+;;; Copyright © 2023 Zheng Junjie <873216071@qq.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -4493,13 +4494,30 @@ cannot be adequately worked around on the client side of the wire.")
"012jpyj7xfm653a9jcfqbzxyywdmwb2b5wr1dwylx14f3f54jma6"))))
(build-system gnu-build-system)
(arguments
- '(#:configure-flags '("--disable-static")))
+ `(#:configure-flags '("--disable-static")
+ ,@(if (and (target-riscv64?)
+ (%current-target-system))
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'update-config
+ (lambda* (#:key native-inputs inputs #:allow-other-keys)
+ (for-each (lambda (file)
+ (install-file
+ (search-input-file
+ (or native-inputs inputs)
+ (string-append "/bin/" file)) "."))
+ '("config.guess" "config.sub"))))))
+ '())))
(propagated-inputs
(list libxi xorgproto))
(inputs
- (list libx11))
+ (list libx11))
(native-inputs
- (list pkg-config))
+ (append (if (and (target-riscv64?)
+ (%current-target-system))
+ (list config)
+ '())
+ (list pkg-config)))
(home-page "https://www.x.org/wiki/")
(synopsis "Xorg library for Xtest and Record extensions")
(description
@@ -5620,11 +5638,29 @@ The XCB util-renderutil module provides the following library:
"0gra7hfyxajic4mjd63cpqvd20si53j1q3rbdlkqkahfciwq3gr8"))))
(build-system gnu-build-system)
(arguments
- '(#:configure-flags '("--disable-static")))
+ `(#:configure-flags '("--disable-static")
+ ,@(if (and (target-riscv64?)
+ (%current-target-system))
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'update-config-scripts
+ (lambda* (#:key inputs native-inputs #:allow-other-keys)
+ ;; Replace outdated config.guess and config.sub.
+ (for-each (lambda (file)
+ (install-file
+ (search-input-file
+ (or native-inputs inputs)
+ (string-append "/bin/" file)) "."))
+ '("config.guess" "config.sub"))))))
+ '())))
(propagated-inputs
(list libxcb))
(native-inputs
- (list m4 pkg-config))
+ (append (if (and (target-riscv64?)
+ (%current-target-system))
+ (list config)
+ '())
+ (list m4 pkg-config)))
(home-page "https://cgit.freedesktop.org/xcb/util-wm/")
(synopsis "Client and window-manager helpers for ICCCM and EWMH")
(description