diff options
author | Ricardo Wurmus <rekado@elephly.net> | 2023-04-27 09:25:26 +0200 |
---|---|---|
committer | Ricardo Wurmus <rekado@elephly.net> | 2023-04-27 09:25:26 +0200 |
commit | 9d82c475a3abfc16f2e03491a34672c35d9852fb (patch) | |
tree | cba65936cbeb7f70a26092d5bcc9e510ad6153d9 /gnu/packages | |
parent | f196b3b7a53b94fb855cb2e5365468feedda750c (diff) |
gnu: express: Adjust bamtools location.
* gnu/packages/bioinformatics.scm (express)[arguments]: Modify location of
libbamtools.so in 'use-shared-boost-libs-and-set-bamtools-paths; drop trailing
#T.
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 42 |
1 files changed, 21 insertions, 21 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ef84e65ed7..4b69342a3b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4584,27 +4584,27 @@ dynamic programming or a variety of heuristics.") "18nb22n7x820fzjngf4qgyb3mspqkw7xyk7v7s5ps6wfrd8qwscb")))) (build-system cmake-build-system) (arguments - `(#:tests? #f ;no "check" target - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'use-shared-boost-libs-and-set-bamtools-paths - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "CMakeLists.txt" - (("set\\(Boost_USE_STATIC_LIBS ON\\)") - "set(Boost_USE_STATIC_LIBS OFF)") - (("\\$\\{CMAKE_CURRENT_SOURCE_DIR\\}/bamtools/include") - (string-append (assoc-ref inputs "bamtools") "/include/bamtools"))) - (substitute* "src/CMakeLists.txt" - (("\\$\\{CMAKE_CURRENT_SOURCE_DIR\\}/\\.\\./bamtools/lib") - (string-append (assoc-ref inputs "bamtools") "/lib")) - (("libprotobuf.a") "libprotobuf.so")) - #t)) - (add-after 'unpack 'remove-update-check - (lambda _ - (substitute* "src/main.cpp" - (("#include \"update_check.h\"") "") - (("check_version\\(PACKAGE_VERSION\\);") "")) - #t))))) + (list + #:tests? #f ;no "check" target + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'use-shared-boost-libs-and-set-bamtools-paths + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "CMakeLists.txt" + (("set\\(Boost_USE_STATIC_LIBS ON\\)") + "set(Boost_USE_STATIC_LIBS OFF)") + (("\\$\\{CMAKE_CURRENT_SOURCE_DIR\\}/bamtools/include") + (search-input-directory inputs "/include/bamtools")) + (("\\$\\{PROJECT_SOURCE_DIR\\}/bamtools/lib/libbamtools.a") + (search-input-file inputs "/lib/libbamtools.so")) + (("libbamtools.a") "libbamtools.so")) + (substitute* "src/CMakeLists.txt" + (("libprotobuf.a") "libprotobuf.so")))) + (add-after 'unpack 'remove-update-check + (lambda _ + (substitute* "src/main.cpp" + (("#include \"update_check.h\"") "") + (("check_version\\(PACKAGE_VERSION\\);") ""))))))) (inputs (list boost bamtools protobuf zlib)) (home-page "http://bio.math.berkeley.edu/eXpress") |