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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-05-04 11:27:39 +0200
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-05-04 11:29:41 +0200
commit4702cec24637fc9cb5ed544817d56e9770b21ebf (patch)
tree7682a8489e79a1928fbda6d74697904ee17ca99a /gnu/packages
parenta73956baf4d1f103fbb574c5f0880e10de1c027b (diff)
gnu: bamtools: Set rpath via LDFLAGS.
* gnu/packages/bioinformatics.scm (bamtools): Add a pre-configure phase setting $LDFLAGS to set the rpath to $out/lib/bamtools.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioinformatics.scm12
1 files changed, 11 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8bc5b868ec..7dc1bc48ce 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -62,7 +62,17 @@
(base32
"1brry29bw2xr2l9pqn240rkqwayg85b8qq78zk2zs6nlspk4d018"))))
(build-system cmake-build-system)
- (arguments `(#:tests? #f)) ;no "check" target
+ (arguments
+ `(#:tests? #f ;no "check" target
+ #:phases
+ (modify-phases %standard-phases
+ (add-before
+ 'configure 'set-ldflags
+ (lambda* (#:key outputs #:allow-other-keys)
+ (setenv "LDFLAGS"
+ (string-append
+ "-Wl,-rpath="
+ (assoc-ref outputs "out") "/lib/bamtools")))))))
(inputs `(("zlib" ,zlib)))
(home-page "https://github.com/pezmaster31/bamtools")
(synopsis "C++ API and command-line toolkit for working with BAM data")