diff options
author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2023-11-06 12:06:41 +0100 |
---|---|---|
committer | Ricardo Wurmus <rekado@elephly.net> | 2023-11-13 15:00:00 +0100 |
commit | 4e1c6f499880e867d162dacff32c59635e675dbf (patch) | |
tree | 1f00a11a1f4e62d845eca7cf83a1d98a26b7ddc1 /gnu/packages | |
parent | 47a419564976aff55fed898c478ee43b96ab9159 (diff) |
gnu: Add r-basics.
* gnu/packages/bioconductor.scm (r-basics): New variable.
Change-Id: I6f0afeeb41f667d780707af65034d5ba978f0d4a
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioconductor.scm | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 303a3a2450..3955f04bf1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -22622,6 +22622,56 @@ viewpoint can be visualized as a coverage plot based on a running median approach and a multi-scale contact profile.") (license license:lgpl3))) +(define-public r-basics + (package + (name "r-basics") + (version "2.14.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BASiCS" version)) + (sha256 + (base32 "0kf215n151sxphc5w9h4i2xsk7lmysi4abwcpyz4slbwhpki3ac8")))) + (properties `((upstream-name . "BASiCS"))) + (build-system r-build-system) + (propagated-inputs + (list r-assertthat + r-biobase + r-biocgenerics + r-biocparallel + r-coda + r-cowplot + r-ggextra + r-ggplot2 + r-hexbin + r-mass + r-matrix + r-matrixstats + r-posterior + r-rcpp + r-rcpparmadillo + r-reshape2 + r-s4vectors + r-scran + r-scuttle + r-singlecellexperiment + r-summarizedexperiment + r-viridis)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/catavallejos/BASiCS") + (synopsis "Bayesian analysis of single-cell sequencing data") + (description + "@acronym{BASiCS, Bayesian analysis of single-cell sequencing data} is an +integrated Bayesian hierarchical model to perform statistical analyses of +single-cell RNA sequencing datasets in the context of supervised experiments +(where the groups of cells of interest are known a priori. BASiCS performs +built-in data normalisation (global scaling) and technical noise quantification +(based on spike-in genes). BASiCS provides an intuitive detection criterion +for highly (or lowly) variable genes within a single group of cells. +Additionally, BASiCS can compare gene expression patterns between two or more +pre-specified groups of cells.") + (license license:gpl3))) + (define-public r-basilisk-utils (package (name "r-basilisk-utils") |