diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2024-01-11 17:08:56 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-11 17:10:24 +0100 |
| commit | 59706daf02296a3814ffb3128d2ceb2a71de3950 (patch) | |
| tree | a7564df7164eca162df51d8e259e75f790e407d1 /gnu/packages | |
| parent | 24f000a49a00b8dd3e9f51e08f0ef5567edf04aa (diff) | |
gnu: r-cytolib: Unbundle boost.
* gnu/packages/bioconductor.scm (r-cytolib)[source]: Remove bundled copy of
boost.
[arguments]: Change build system to link with existing boost library.
[inputs]: Add boost, openblas, protobuf, and zlib.
Change-Id: I3d1b7d10c80ddaf8ed8eedfe9178ab212ef48e8d
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 25 |
1 files changed, 24 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 69e6677062..d82a73ac51 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -59,6 +59,7 @@ #:use-module (gnu packages python) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages protobuf) #:use-module (gnu packages statistics) #:use-module (gnu packages tls) #:use-module (gnu packages web) @@ -17756,9 +17757,31 @@ of the analyses while minimizing technical noise.") (uri (bioconductor-uri "cytolib" version)) (sha256 (base32 - "1r2slhzrp3gf45k5gknqgj3vjz7p0rx2yjzrbp020inj82fp4mgi")))) + "1r2slhzrp3gf45k5gknqgj3vjz7p0rx2yjzrbp020inj82fp4mgi")) + ;; Remove bundled boost sources + (modules '((guix build utils))) + (snippet + '(delete-file-recursively "src/boost")))) (properties `((upstream-name . "cytolib"))) (build-system r-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'unbundle + (lambda _ + (substitute* "src/Makevars.in" + (("\\$\\(USERLIB\\): \\$\\{boost_fs_objs\\}") + "$(USERLIB):") + (("\\$\\{cytolib_objs\\} \\$\\{boost_fs_objs\\} \\$\\{boost_sys_objs\\}") + "${cytolib_objs}") + (("PKG_CPPFLAGS =") + "PKG_CPPFLAGS = -lboost_filesystem") + #; + (("^BOOSTFSLIB.*") + (string-append "BOOSTFSLIB=" + #$(this-package-input "boost") "/libboost_filesystem.so\n")))))))) + (inputs (list boost openblas protobuf zlib)) (native-inputs (list r-knitr)) (propagated-inputs |