diff options
author | nafkhamdc <navid.afkhami@mdc-berlin.de> | 2023-11-13 12:34:43 +0000 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2023-11-13 14:46:51 +0100 |
commit | 951a1433f38a7cffa4cbcb4065c27494c300f2fa (patch) | |
tree | cce54b5e2385f0fe0fc936c1f77e8c5b4eb2447e /gnu/packages | |
parent | 77386bdbfe6b0c649c05ab37f08051d1ab3e5074 (diff) |
gnu: Add r-illuminahumanmethylationepicmanifest.
* gnu/packages/bioinformatics.scm (r-illuminahumanmethylationepicmanifest): New variable.
Change-Id: I9635033ed5e7e44ecfaff76cd002379582900686
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7feea35d74..a414a58382 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15657,6 +15657,41 @@ analysing cytometry data in R.") spatial single-cell expression data.") (license license:expat)))) +;; Variant of r-illuminahumanmethylationepicmanifest in the +;; (gnu packages bioconductor) module. +(define-public r-illuminahumanmethylationepicmanifest-latest + (let ((commit "a9ffbad36f5e496ece6c4c37b80e2f4f7e02d0c3") + (revision "1")) + (package + (name "r-illuminahumanmethylationepicmanifest") + (version (git-version "1.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url + "https://github.com/achilleasNP/IlluminaHumanMethylationEPICmanifest") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0v8f0hl0v8gwi61vgqw56rn5j09h95hj54rb8pzbn0znm162n4fc")))) + (properties `((upstream-name . "IlluminaHumanMethylationEPICmanifest"))) + (build-system r-build-system) + (home-page + "https://github.com/achilleasNP/IlluminaHumanMethylationEPICmanifest") + (synopsis "Illumina Human Methylation Manifest 1.0 B5 for R and minfi") + (description + "This is a drop-in replacement for the +@code{IlluminaHumanMethylationEPIC} package. It utilizes a Manifest based on +1.0B5 annotation. As of version 0.3.0, the +@code{IlluminaHumanMethylationEPIC} package still employs the 1.0B2 annotation +manifest. A corresponding annotation package, +@code{IlluminaHumanMethylationEPICanno.ilm10b5.hg38}, is available to ensure +proper annotation. The decision to maintain the same name is due to +complications in downstream processing caused by array name lookup in certain +preprocessing options.") + (license license:artistic2.0)))) + (define-public r-illuminahumanmethylationepicanno-ilm10b5-hg38 (let ((commit "3db06910e27f626e0cc8b335ff45cf9a4050a36a") (revision "1")) |