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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-09-21 22:45:35 +0200
committerRicardo Wurmus <rekado@elephly.net>2016-09-26 07:47:53 +0200
commitad740ff818b834dc58bd37584f786bac7ef52d2e (patch)
treebdeb9ba1b90120db8bd4ab94996e2806d2d6c84f /gnu
parentcd9e7dc7ff32e04accd1910cd2bc060bf6c23857 (diff)
gnu: Add r-gseabase.
* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0456cc61c7..2cbda0cd73 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5220,6 +5220,33 @@ databases. Packages produced are intended to be used with AnnotationDbi.")
the graph algorithms contained in the Boost library.")
(license license:artistic2.0)))
+(define-public r-gseabase
+ (package
+ (name "r-gseabase")
+ (version "1.34.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GSEABase" version))
+ (sha256
+ (base32
+ "1mvgja8malrnbzfakzjl5mmi7g080kj8zgxwc5964hcmn33i937j"))))
+ (properties `((upstream-name . "GSEABase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotate" ,r-annotate)
+ ("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-graph" ,r-graph)
+ ("r-xml" ,r-xml)))
+ (home-page "http://bioconductor.org/packages/GSEABase")
+ (synopsis "Gene set enrichment data structures and methods")
+ (description
+ "This package provides classes and methods to support @dfn{Gene Set
+Enrichment Analysis} (GSEA).")
+ (license license:artistic2.0)))
+
(define-public vsearch
(package
(name "vsearch")