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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2023-01-18 18:35:59 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-01-18 22:43:58 +0100 |
| commit | fda2d75d8d886ac32e20b7c5cebff378f2e374b9 (patch) | |
| tree | db877c6f28137b8ef3f9dc714c7742de3e145c33 /gnu | |
| parent | 4f7ef3f5284054c5d56b2ce7609ebf57a51e00eb (diff) | |
gnu: Add r-breakpointr.
* gnu/packages/bioconductor.scm (r-breakpointr): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 84a701d038..93c6165b62 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3500,6 +3500,40 @@ of Bioconductor.") packages.") (license license:artistic2.0))) +(define-public r-breakpointr + (package + (name "r-breakpointr") + (version "1.16.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "breakpointR" version)) + (sha256 + (base32 + "0j1f43lhgkapjyxlil9fflqh9nf3andhmvirdcv45y60wvljn4gx")))) + (properties `((upstream-name . "breakpointR"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocgenerics + r-breakpointrdata + r-cowplot + r-doparallel + r-foreach + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-ggplot2 + r-gtools + r-iranges + r-rsamtools + r-s4vectors)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/daewoooo/BreakPointR") + (synopsis "Find breakpoints in Strand-seq data") + (description + "This package implements functions for finding breakpoints, plotting and +export of Strand-seq data.") + (license license:expat))) + (define-public r-cardelino (package (name "r-cardelino") |