diff options
| author | Antero Mejr <antero@mailbox.org> | 2022-06-15 15:39:53 +0000 |
|---|---|---|
| committer | Ludovic Courtès <ludo@gnu.org> | 2023-01-08 16:11:45 +0100 |
| commit | 15caeb745c5d77b69905d38d43b4d09742bc71b6 (patch) | |
| tree | dead084ef3819aa0e58330ed42fa2fb8df63f345 /gnu | |
| parent | 04f247be81dcb5296ecab776f735bb615a1039d3 (diff) | |
gnu: Add gdcm.
* gnu/packages/bioinformatics.scm (gdcm): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5aafaa6df6..c3ede81a59 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -24,6 +24,7 @@ ;;; Copyright © 2021, 2022 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2021 Felix Gruber <felgru@posteo.net> ;;; Copyright © 2022 Navid Afkhami <navid.afkhami@mdc-berlin.de> +;;; Copyright © 2022 Antero Mejr <antero@mailbox.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -17767,6 +17768,42 @@ module capable of computing base-level alignments for very large sequences.") (home-page "https://github.com/ekg/wfmash") (license license:expat))) +(define-public gdcm + (package + (name "gdcm") + (version "2.8.9") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/malaterre/gdcm") + (commit (string-append "v" version)) + (recursive? #t))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1j8mjnxcwn2xvzhf25lv4dbawxbgc4im1crh8081li7i4mbwswaj")))) + (build-system cmake-build-system) + (arguments + (list + #:configure-flags + #~(list "-DGDCM_BUILD_TESTING=true" + (string-append "-DCMAKE_CTEST_ARGUMENTS=-E;" + "'TestFileMetaInformation" + "|TestElement2" + "|TestSCUValidation" + "|TestEcho" + "|TestFind'")))) + (home-page "http://gdcm.sourceforge.net/wiki/index.php/Main_Page") + (synopsis "Grassroots DICOM library") + (description + "Grassroots DICOM (GDCM) is an implementation of the DICOM standard +designed to be open source so that researchers may access clinical data +directly. GDCM includes a file format definition and a network communications +protocol, both of which should be extended to provide a full set of tools for +a researcher or small medical imaging vendor to interface with an existing +medical database.") + (license license:bsd-2))) + (define-public wiggletools (package (name "wiggletools") |