diff options
author | Lars-Dominik Braun <lars@6xq.net> | 2023-05-11 08:33:02 +0200 |
---|---|---|
committer | Lars-Dominik Braun <lars@6xq.net> | 2024-06-30 09:18:32 +0200 |
commit | 44a6091ea29b851fbdac061fcff8cd99d5793908 (patch) | |
tree | 4eae7726202aca72eac4a74749278281208b0823 /gnu | |
parent | ab41f5ec1cf559708165e1cd28e15538e6a197d6 (diff) |
build-system/pyproject: Use python-sans-pip-wrapper as default-python.
Also adds python-setuptools and python-wheel to relevant packages,
either to native-inputs or to propagated inputs if the pkg_resources
Python module is loaded at runtime.
* guix/build-system/pyproject.scm (default-python): Default to
python-sans-pip-wrapper.
Change-Id: I2d986c2225114f54459dd6bb360913106e52cdf4
Diffstat (limited to 'gnu')
37 files changed, 517 insertions, 228 deletions
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm index 1060b3c794..e827f800b0 100644 --- a/gnu/packages/admin.scm +++ b/gnu/packages/admin.scm @@ -4985,7 +4985,7 @@ elogind's uaccess feature.") (lambda _ (substitute* (find-files "tests" "^test.*\\.py$") (("America/Los_Angeles") "PST8PDT"))))))) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-pygments python-ruamel.yaml python-xmltodict)) (home-page "https://github.com/kellyjonbrazil/jc") diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 954776f545..ff2fa8a1cc 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -912,7 +912,8 @@ astronomical images, especially when there is no WCS information available.") (propagated-inputs (list python-astropy python-matplotlib python-numpy python-scikit-learn python-scipy)) (native-inputs (list python-pytest-astropy-header python-pytest-cov - python-pytest-doctestplus python-pytest-remotedata)) + python-pytest-doctestplus python-pytest-remotedata + python-setuptools python-wheel)) (home-page "https://astroml.org") (synopsis "Tools for machine learning and data mining in astronomy") (description "This package provides tools for machine learning and data @@ -1033,7 +1034,8 @@ CFITSIO library. Among other things, it can python-numpy python-scipy python-supersmoother)) - (native-inputs (list python-pytest python-nose python-setuptools-scm)) + (native-inputs (list python-pytest python-nose python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/astroml/gatspy") (synopsis "General tools for astronomical time series in Python") (description @@ -1768,7 +1770,9 @@ astronomy and astrophysics.") (list python-extension-helpers python-hypothesis python-pytest-astropy - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (propagated-inputs (list python-astropy python-numpy)) (home-page "https://github.com/astropy/astropy-healpix") @@ -1984,7 +1988,9 @@ to access online Astronomical data. Each web service has its own sub-package.") python-extension-helpers python-pytest-astropy python-scipy - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (propagated-inputs (list python-astropy python-numpy)) (home-page "https://github.com/astropy/astroscrappy") (synopsis "Speedy Cosmic Ray Annihilation Package in Python") @@ -2128,7 +2134,10 @@ bad pixel tracking throughout the reduction process.") python-pytest-cov python-pytest-remotedata python-setuptools-scm - python-xarray)) + python-xarray + python-xarray + python-setuptools + python-wheel)) (home-page "https://github.com/MAVENSDC/cdflib") (synopsis "Python library to deal with NASA's CDF astronmical data format") (description "This package provides a Python @acronym{CDF, Computable @@ -2236,7 +2245,9 @@ files and provide related services.") (list python-astropy python-pytest python-pytest-cov - python-pytest-mypy)) + python-pytest-mypy + python-setuptools + python-wheel)) (home-page "https://github.com/poliastro/czml3") (synopsis "Python library to write CZML") (description @@ -2297,9 +2308,9 @@ used with local NetDRMS sites.") ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs - (list python-astropy python-numpy)) + (list python-astropy python-numpy python-setuptools)) (native-inputs - (list python-pytest python-setuptools-scm)) + (list python-flake8 python-pytest python-setuptools-scm python-wheel)) (home-page "https://github.com/spacetelescope/drizzle") (synopsis "Astronomical tool for combining dithered images into a single image") @@ -2374,7 +2385,8 @@ of dates.") (propagated-inputs (list python-pydantic-2 python-pydantic-settings python-requests)) (native-inputs - (list python-pytest python-pytest-astropy)) + (list python-pytest python-pytest-astropy python-setuptools + python-wheel)) (home-page "https://helioviewer.org/") (synopsis "Helioviewer Python API Wrapper") (description "@code{hvpy} is a Python API wrapper around the formal @@ -2395,7 +2407,9 @@ of dates.") (native-inputs (list python-pytest python-pytest-mpl - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (propagated-inputs (list python-astropy python-matplotlib @@ -2645,7 +2659,9 @@ Low-Earth Orbit (LEO).") python-pytest-xdist python-scikit-image python-setuptools-scm - python-sphinx)) + python-setuptools + python-sphinx + python-wheel)) (home-page "https://poppy-optics.readthedocs.io/") (synopsis "Physical Optics Propagation in Python") (description @@ -2703,7 +2719,8 @@ interest, and which require portability between platforms or ease of scripting." ;; <https://github.com/astropy/pyvo/issues/547>. #:test-flags #~(list "-k" "not test_single_table_description"))) (native-inputs - (list python-pytest-astropy python-requests-mock python-setuptools-scm)) + (list python-pytest-astropy python-requests-mock python-setuptools-scm + python-setuptools python-wheel)) (propagated-inputs (list python-astropy python-pillow python-requests)) (home-page "https://github.com/astropy/pyvo") @@ -3242,7 +3259,10 @@ spherical polygons that represent arbitrary regions of the sky.") ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-numpy python-scipy)) - (native-inputs (list python-pytest python-setuptools-scm)) + (native-inputs (list python-pytest + python-setuptools + python-setuptools-scm + python-wheel)) (home-page "https://github.com/spacetelescope/stsci.image") (synopsis "Image array manipulation functions") (description @@ -3310,7 +3330,11 @@ task}.") (propagated-inputs (list python-numpy)) (native-inputs - (list python-pytest python-setuptools-scm python-waf)) + (list python-pytest + python-setuptools + python-setuptools-scm + python-waf + python-wheel)) (home-page "https://stscistimage.readthedocs.io/en/latest/") (synopsis "STScI image processing") (description @@ -3356,7 +3380,9 @@ processing functions: @code{xyxymatch}, @code{geomap}.") python-pytest python-pytest-cov python-pytest-doctestplus - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://github.com/spacetelescope/stcal") (synopsis "STScI tools and algorithms used in calibration pipelines") (description "STScI tools and algorithms used in calibration pipelines.") @@ -4212,7 +4238,9 @@ functions, so that they can be called with scalar or array inputs.") (native-inputs (list python-cython python-pandas - python-pytest)) + python-pytest + python-setuptools + python-wheel)) (propagated-inputs (list python-h5py python-matplotlib @@ -4337,12 +4365,14 @@ comparison, and validation are provided.") (native-inputs (list python-pytest python-pytest-remotedata - python-setuptools-scm)) + python-setuptools-scm + python-wheel)) (propagated-inputs (list python-astropy python-beautifulsoup4 python-numpy python-pytest-astropy-header + python-setuptools python-six)) (home-page "https://github.com/spacetelescope/pysynphot") (synopsis "Python Synthetic Photometry Utilities") @@ -4420,7 +4450,9 @@ object.") (native-inputs (list python-pytest python-pytest-astropy - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://github.com/spacetelescope/synphot_refactor") (synopsis "Synthetic photometry using Astropy") (description @@ -4498,7 +4530,9 @@ support for reading and writing various compression algorithms including: python-pypa-build python-pytest python-packaging - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (propagated-inputs (list python-importlib-resources)) (home-page "https://asdf-standard.readthedocs.io/") (synopsis "ASDF standard schemas") @@ -4526,7 +4560,7 @@ up-front for extensibility.") (arguments ;; Dependency cycle with python-asdf (list #:tests? #f)) - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools-scm python-setuptools python-wheel)) (propagated-inputs (list python-asdf-standard python-importlib-resources)) (home-page "https://github.com/asdf-format/asdf-transform-schemas") (synopsis "ASDF schemas for transforms") @@ -4651,7 +4685,7 @@ install an implementation package such as asdf-astropy.") (arguments ;; Dependency cycle with python-asdf (list #:tests? #f)) - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools-scm python-setuptools python-wheel)) (propagated-inputs (list python-asdf-standard python-importlib-resources)) (home-page "https://asdf-unit-schemas.readthedocs.io/") (synopsis "ASDF serialization schemas for the units defined by @code{astropy.units}") @@ -5015,9 +5049,10 @@ between image and reference catalogs. Currently only aligning images with (base32 "15kq7z30m9i286ncs9xvpaq3dq1p5fa47jz21prq146qwr7j6dm8")))) (build-system pyproject-build-system) - (propagated-inputs (list python-numpy python-scipy)) + (propagated-inputs (list python-numpy python-scipy python-setuptools)) (native-inputs (list python-codecov python-pytest python-pytest-cov - python-pytest-doctestplus python-setuptools-scm)) + python-pytest-doctestplus python-setuptools-scm + python-wheel)) (home-page "https://github.com/spacetelescope/wiimatch") (synopsis "Optimal matching of weighted N-dimensional image intensity data") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8e497f1199..236bab79e3 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1763,7 +1763,8 @@ intended to behave exactly the same as the original BWK awk.") (base32 "1pm1szyxabhn8jismrj9cjhf88ajgcmm39f0cgf36iagw5qakprl")))) (build-system pyproject-build-system) - (propagated-inputs (list python-biopython python-six)) + (propagated-inputs (list python-biopython python-six python-setuptools + python-wheel)) (native-inputs (list python-pytest)) (home-page "https://github.com/chapmanb/bcbb/tree/master/gff") (synopsis "Read and write GFF files with Biopython integration") @@ -1888,7 +1889,7 @@ from bokeh.util.dataclasses import entries\n")) python-tornado-6 python-tqdm python-umap-learn)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/LooseLab/bulkVis") (synopsis "Interactive visualization of bulk RNA-seq data") (description @@ -2219,7 +2220,8 @@ biological activities from omics data within a unified framework.") python-scikit-learn python-scipy python-seaborn)) - (native-inputs (list python-cython python-setuptools-scm)) + (native-inputs (list python-cython python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/lilab-bcb/demuxEM") (synopsis "Analyze cell-hashing/nucleus-hashing data") (description @@ -2292,6 +2294,7 @@ from single-cell RNA-sequencing.") python-numpy python-pandas python-scipy)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/SegataLab/hclust2/") (synopsis "Plotting heat-maps for publications") (description @@ -2311,7 +2314,7 @@ to produce high quality figures that can be used in publications.") "111q4pzkav26aa3hkgh948wqlyrq7dq6sjml9z63n3blw8s6b0c4")))) (build-system pyproject-build-system) (native-inputs - (list python-setuptools-scm)) + (list python-setuptools-scm python-setuptools python-wheel)) (propagated-inputs (list python-humanize python-requests python-six)) (home-page "https://pypi.org/project/htsget/") @@ -2411,6 +2414,7 @@ framework enables the use of any LR method with any resources.") (build-system pyproject-build-system) (propagated-inputs (list python-matplotlib python-numpy python-pandas)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://logomaker.readthedocs.io") (synopsis "Package for making Sequence Logos") (description "Logomaker is a Python package for generating @@ -2645,7 +2649,8 @@ three prime UTR.") python-pillow python-scipy python-zarr)) - (native-inputs (list python-cython python-setuptools-scm)) + (native-inputs (list python-cython python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/lilab-bcb/pegasusio") (synopsis "Read or write single-cell genomics data") (description @@ -2704,7 +2709,7 @@ weight.astype(\"str\") + '\\n')"))))))) python-scikit-learn python-scipy)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/dpeerlab/PhenoGraph.git") (synopsis "Graph-based clustering for high-dimensional single-cell data") (description @@ -2735,6 +2740,7 @@ similarities between cells and then identifying communities in this graph.") python-numpy python-pandas python-seaborn)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/biobakery/phylophlan") (synopsis "Phylogenetic analysis of microbial isolates and genomes from metagenomes") @@ -2814,6 +2820,8 @@ phylogenetic markers, and can also scale to very large phylogenies comprising python-cython kentutils ; for bedGraphToBigWig python-six + python-setuptools + python-wheel ;; For the test suite. python-pytest python-psutil)) @@ -3194,6 +3202,7 @@ alignments and perform the following operations: (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;there are none (propagated-inputs (list python-pandas)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/alexomics/read-paf") (synopsis "Minimap2 PAF file reader") (description @@ -3306,6 +3315,7 @@ sequencing.") (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-numpy)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://biopython.org/") (synopsis "Tools for biological computation in Python") (description @@ -4364,7 +4374,8 @@ off-target reads for a capture method that targets CpG-rich region.") (inputs (list zlib)) (native-inputs - (list python-cython python-lzo python-pytest)) + (list python-cython python-lzo python-pytest python-setuptools + python-wheel)) (home-page "https://github.com/bxlab/bx-python") (synopsis "Tools for manipulating biological data") (description @@ -4494,6 +4505,8 @@ omics data.") (native-inputs (list python-cython python-pytest + python-setuptools + python-wheel ;; Dependencies below are are for tests only. samtools bcftools)) @@ -4587,6 +4600,8 @@ UCSC genome browser.") (native-inputs `(("python-cython" ,python-cython) ("python-pytest" ,python-pytest) + ("python-setuptools" ,python-setuptools) + ("python-wheel" ,python-wheel) ("test-data" ,(origin (method url-fetch) @@ -4914,7 +4929,8 @@ file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.") (arguments (list #:tests? #false)) ;there are none (native-inputs - (list python-cython python-pytest python-setuptools-scm)) + (list python-cython python-pytest python-setuptools-scm + python-setuptools python-wheel)) (propagated-inputs (list python-xopen)) (home-page "https://github.com/marcelm/dnaio/") @@ -5266,6 +5282,7 @@ gkm-SVM.") (list python-numpy)) (inputs (list libbigwig zlib curl)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/dpryan79/pyBigWig") (synopsis "Access bigWig files in Python using libBigWig") (description @@ -5391,9 +5408,12 @@ Note that this package has been deprecated in favor of @code{pyfaidx}.") python-mypy-extensions python-rdflib python-requests - python-ruamel.yaml)) + python-ruamel.yaml + python-setuptools ; For pkg_resources. + python-typing-extensions)) (native-inputs - (list python-black python-pytest python-pytest-runner python-pytest-xdist)) + (list python-black python-pytest python-pytest-runner + python-wheel)) (home-page "https://github.com/common-workflow-language/schema_salad") (synopsis "Schema Annotations for Linked Avro Data (SALAD)") (description @@ -5477,6 +5497,7 @@ resources for bioinformatics.") python-scikit-learn python-scipy python-umap-learn)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/swolock/scrublet") (synopsis "Tool to indentify and remove doublets in single-cell data") (description "This package provides a tool for identifying and removing @@ -5642,6 +5663,7 @@ documents.") python-requests python-ruamel.yaml python-schema-salad + python-setuptools ; For pkg_resources. python-shellescape python-spython python-typing-extensions @@ -5655,7 +5677,7 @@ documents.") python-pytest-cov python-pytest-mock python-pytest-runner - python-pytest-xdist)) + python-wheel)) (home-page "https://github.com/common-workflow-language/common-workflow-language") (synopsis "Common Workflow Language reference implementation") @@ -5709,7 +5731,8 @@ CWL descriptions.") (substitute* "tests/test_datamodel_taxon.py" (("collections.Iterable") "collections.abc.Iterable"))))))) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-wheel)) + (propagated-inputs (list python-setuptools)) (home-page "https://dendropy.org/") (synopsis "Library for phylogenetics and phylogenetic computing") (description @@ -6531,7 +6554,8 @@ multiple DJU methods.") (base32 "0cjpzyqz6r4lmiwry2gcxdczwpkhl3lyyjg4s8addln17691ysxk")))) (build-system pyproject-build-system) - (propagated-inputs (list python-pytest)) + (propagated-inputs (list python-pytest python-setuptools)) + (native-inputs (list python-wheel)) (home-page "https://github.com/betteridiot/bamnostic/") (synopsis "Tool for binary alignment map, random access and parsing") (description @@ -6629,7 +6653,7 @@ analysis tool Scanpy (Genome Biology, 2018).") python-pyqt python-scipy)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "http://etetoolkit.org") (synopsis "Python environment for phylogenetic tree exploration") (description @@ -6650,6 +6674,7 @@ exploration.") (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;there are none (propagated-inputs (list python-matplotlib python-numpy python-levenshtein)) + (native-inputs (list python-setuptools python-wheel python-pip)) (home-page "https://github.com/meren/illumina-utils") (synopsis "Library and scripts to work with Illumina paired-end data") (description @@ -6673,6 +6698,7 @@ Illumina paired-end data (for CASAVA 1.8+).") (propagated-inputs (list python-biopython python-matplotlib python-pandas python-scipy python-seaborn)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://widdowquinn.github.io/pyani/") (synopsis "Calculate genome-scale average nucleotide identity") (description @@ -10347,7 +10373,9 @@ complexity samples.") (build-system pyproject-build-system) (native-inputs (list python-pytest-cov - python-pytest-runner)) + python-pytest-runner + python-setuptools + python-wheel)) (home-page "https://github.com/dib-lab/screed/") (synopsis "Short read sequence database utilities") (description "Screed parses FASTA and FASTQ files and generates databases. @@ -10689,7 +10717,7 @@ bioinformatics file formats, sequence alignment, and more.") (inputs (list python-biopython python-pygtrie)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/fhcrc/seqmagick") (synopsis "Tools for converting and modifying sequence files") (description @@ -13799,10 +13827,12 @@ replacement for strverscmp.") python-requests python-rich python-rich-click + python-setuptools ; For pkg_resources. python-simplejson python-spectra)) (native-inputs `(("python-pytest" ,python-pytest) + ("python-wheel" ,python-wheel) ("tests" ,(let ((commit "c3e7400affe3f3ca996973805797af61b93070ba")) (origin @@ -15537,9 +15567,10 @@ using the same syntax.") python-pydot python-requests python-scipy + python-setuptools python-statsmodels python-xlsxwriter)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-wheel)) (home-page "https://github.com/tanghaibao/goatools") (synopsis "Python scripts to find enrichment of GO terms") (description "Python scripts to find enrichment of GO terms. In addition, @@ -15655,9 +15686,10 @@ API services.") python-pysam python-regex python-ruamel.yaml + python-setuptools snakemake)) (native-inputs - (list python-pytest)) + (list python-pytest python-wheel)) (home-page "https://github.com/caleblareau/mgatk") (synopsis "Mitochondrial genome analysis toolkit.") (description "This package is a Python-based command line interface for @@ -17892,6 +17924,7 @@ implementation differs in these ways: python-patsy python-scikit-learn python-scipy + python-setuptools ; For pkg_resources. python-seaborn python-session-info python-sinfo @@ -18284,7 +18317,9 @@ bgzipped text file that contains a pair of genomic coordinates per line.") python-mock python-numpy python-pytest - python-pytest-cov)) + python-pytest-cov + python-wheel)) + (propagated-inputs (list python-setuptools)) (home-page "http://mattshirley.com") (synopsis "Random access to fasta subsequences") (description @@ -18406,7 +18441,7 @@ includes operations like compartment, insulation or peak calling.") python-scipy python-tables)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/deeptools/HiCMatrix/") (synopsis "HiCMatrix class for HiCExplorer and pyGenomeTracks") (description @@ -19266,6 +19301,7 @@ polymorphisms) and indels with respect to a reference genome and more.") ;; R packages r-dnacopy)) (inputs (list r-minimal)) ;for tests + (native-inputs (list python-setuptools python-wheel)) (home-page "https://cnvkit.readthedocs.org/") (synopsis "Copy number variant detection from targeted DNA sequencing") (description @@ -21492,7 +21528,9 @@ coordinates between different assemblies.") (list python-pytest lsof inetutils - openssl)) + openssl + python-setuptools + python-wheel)) (inputs (list time)) (propagated-inputs (list python-apsw @@ -21996,6 +22034,7 @@ feature is fast retrieval of range queries into numpy arrays.") (list python-biopython python-matplotlib python-packaging)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer") (synopsis "Plot features from DNA sequences") diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm index 503c7d4a19..d40d54a28f 100644 --- a/gnu/packages/bootloaders.scm +++ b/gnu/packages/bootloaders.scm @@ -72,6 +72,7 @@ #:use-module (gnu packages valgrind) #:use-module (gnu packages virtualization) #:use-module (gnu packages xorg) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (guix build-system gnu) @@ -751,6 +752,8 @@ tree binary files. These are board description files used by Linux and BSD.") pkg-config ;for 'make menuconfig' python python-pyelftools + python-setuptools + python-wheel swig (list util-linux "lib"))) (home-page "https://www.denx.de/wiki/U-Boot/") diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index 550a5d0f1d..67c8ecbe93 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -885,7 +885,7 @@ has been designed to be fast, light and unintrusive.") (base32 "0gymjcnvjx9snyrzdbmjnk93ibb161q72xam29vnl3yyac4r1330")))) (build-system pyproject-build-system) - (native-inputs (list python-nose)) + (native-inputs (list python-nose python-setuptools python-wheel)) (propagated-inputs (list python-cached-property python-configargparse python-jinja2 python-six @@ -1861,7 +1861,8 @@ timeout has been exceeded.") ;; 'hypothesis' plugin is not in the environment (due to ;; <http://issues.guix.gnu.org/25235>), which would cause the test suite ;; to fail (see: https://github.com/pytest-dev/pytest-forked/issues/54). - (list python-pytest-bootstrap python-setuptools-scm)) + (list python-pytest-bootstrap python-setuptools + python-setuptools-scm python-wheel)) (home-page "https://github.com/pytest-dev/pytest-forked") (synopsis "Pytest plugin to run tests in isolated forked subprocesses") (description "This package provides a Pytest plugin which enables running @@ -2186,7 +2187,7 @@ executed.") (lambda _ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$(package-version this-package))))))) - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools-scm python-setuptools python-wheel)) (propagated-inputs (list python-pytest)) (home-page "https://github.com/pytest-dev/pytest-asyncio") (synopsis "Pytest support for asyncio") @@ -2623,7 +2624,9 @@ a Pytest test execution.") python-mypy python-pytest python-pyyaml + python-setuptools python-regex)) + (native-inputs (list python-wheel)) (home-page "https://github.com/TypedDjango/pytest-mypy-plugins") (synopsis "Pytest plugin for writing tests for mypy plugins") (description "This package provides a pytest plugin for writing tests for diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index d9926701f5..23329b9bb0 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -3155,6 +3155,7 @@ protocol with Cython for performance.") (build-system pyproject-build-system) (arguments '(#:tests? #f)) ;test suite requires docker (propagated-inputs (list python-pymysql)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/aio-libs/aiomysql") (synopsis "MySQL driver for Python") (description "@code{aiomysql} is a driver for accessing a MySQL database @@ -3596,7 +3597,8 @@ on localhost.") (build-system pyproject-build-system) (native-inputs (list python-cython ; for C extensions - python-pytest python-mock python-pytest-xdist)) ; for tests + python-pytest python-mock python-pytest-xdist ; for tests + python-setuptools python-wheel)) (propagated-inputs (list python-greenlet)) (arguments @@ -3841,7 +3843,7 @@ text search extension.") (propagated-inputs (list python-click python-click-default-group python-dateutil python-sqlite-fts4 python-tabulate)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/simonw/sqlite-utils") (synopsis "CLI tool and Python utility functions for manipulating SQLite databases") @@ -3914,7 +3916,7 @@ PickleShare.") "10yfbasi4mq63g0svyl1h49ylwn9znjylq78id16dzxzk9q9ipdx")))) (build-system pyproject-build-system) (native-inputs - (list unzip)) + (list unzip python-setuptools python-wheel)) (inputs (list sqlite-next)) ;SQLite 3.45.1 required. (arguments (list @@ -4269,7 +4271,7 @@ for Python. The design goals are: ;; The fix was forwarded upstream, see: ;; https://github.com/redis/hiredis-py/pull/160. (delete-file "tests/__init__.py")))))) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (inputs (list hiredis)) (home-page "https://github.com/redis/hiredis-py") (synopsis "Python extension that wraps protocol parsing code in hiredis") @@ -4361,6 +4363,8 @@ reasonable substitute.") (list python-pytest python-pytest-asyncio python-pytest-timeout + python-setuptools + python-wheel redis)) (propagated-inputs (list python-async-timeout)) diff --git a/gnu/packages/digest.scm b/gnu/packages/digest.scm index 481771804b..e478f43b77 100644 --- a/gnu/packages/digest.scm +++ b/gnu/packages/digest.scm @@ -123,7 +123,7 @@ platforms (both big and little endian).") "1hdxcscry59gh0znlm71ya23mm9rfmvz8lvvlplzxzf63pib28dc")))) (build-system pyproject-build-system) ;; Needed to embed the correct version string - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools-scm python-setuptools python-wheel)) (home-page "https://github.com/ifduyue/python-xxhash") (synopsis "Python binding for xxHash") (description "This package provides Python bindings for the xxHash hash diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index fcb73eab12..40123c6e50 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -2616,7 +2616,7 @@ specification can be downloaded at @url{http://3mf.io/specification/}.") (substitute* "pyvisa/shell.py" (("from .thirdparty import prettytable") "import prettytable"))))))) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-dataclasses python-prettytable python-typing-extensions)) (home-page "https://pyvisa.readthedocs.io/en/latest/") diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm index f82b7d1bf9..760e586cb8 100644 --- a/gnu/packages/fontutils.scm +++ b/gnu/packages/fontutils.scm @@ -530,7 +530,8 @@ converts any cubic curves to quadratic. The most useful function is probably (sha256 (base32 "1rg2997af8blvswlwif0kpz2vxrlh555gzqslz6yv9y7i7v8lphl")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest python-setuptools-scm)) + (native-inputs (list python-pytest python-setuptools-scm + python-setuptools python-wheel)) (propagated-inputs (list python-booleanoperations python-cffsubr @@ -677,7 +678,8 @@ process. FontParts is the successor of RoboFab.") "--ignore=tests/builder/interpolation_test.py"))) (native-inputs (list python-setuptools-scm - + python-setuptools + python-wheel ;; For tests. python-pytest python-xmldiff)) @@ -857,6 +859,7 @@ suite of the @code{psautohint} package.") python-pytest-cov python-pytest-xdist python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/adobe-type-tools/psautohint") (synopsis "Adobe's PostScript autohinter") @@ -1780,7 +1783,7 @@ with @samp{nameIDs}.") (base32 "0yx4i8q5rfyqhr2fj70a7z1bp1jv7bdlr64ww9z4nv9ycbda4x9j")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-setuptools-scm)) + (list python-pytest python-setuptools-scm python-setuptools python-wheel)) (propagated-inputs (list python-attrs python-fonttools)) (home-page "https://github.com/fonttools/ufoLib2") (synopsis "Unified Font Object (UFO) font processing library") diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index 1146939408..dbc2f73034 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -359,7 +359,9 @@ subdivisions.") python-numpy python-pytest python-scikit-build - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (inputs (list h3)) (home-page "https://uber.github.io/h3-py") (synopsis "Python bindings for H3") @@ -1012,7 +1014,7 @@ pyproj, Rtree, and Shapely.") (list python-fiona python-packaging python-pandas python-pyproj python-shapely)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://geopandas.org") (synopsis "Geographic pandas extensions") (description "The goal of GeoPandas is to make working with @@ -1141,7 +1143,7 @@ during conversion.") python-pandas python-requests python-shapely)) - (native-inputs (list python-hatchling python-pytest)) + (native-inputs (list python-hatchling python-pytest python-setuptools python-wheel)) (home-page "https://github.com/gboeing/osmnx") (synopsis "Retrieve, model, analyze, and visualize OpenStreetMap street networks") @@ -2101,7 +2103,7 @@ from multiple records.") (string-append "\"" libspatialindex "/lib/libspatialindex_c.so\""))))))))) (native-inputs - (list python-numpy python-pytest python-wheel)) + (list python-numpy python-pytest python-setuptools python-wheel)) (inputs (list libspatialindex)) (home-page "https://github.com/Toblerity/rtree") diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index 115fe20b52..6fe53171f1 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -249,7 +249,7 @@ more.") (string-append igraph "/lib"))))))))))) (inputs (list igraph)) (propagated-inputs (list python-texttable)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://igraph.org/python/") (synopsis "Python bindings for the igraph network analysis library")))) @@ -417,11 +417,12 @@ algorithm for community detection in large networks.") (("self.use_pkgconfig = False") "self.use_pkgconfig = True"))))))) (inputs (list igraph)) - (propagated-inputs (list python-igraph)) + (propagated-inputs (list python-igraph python-setuptools)) (native-inputs (list pkg-config python-ddt - python-setuptools-scm)) + python-setuptools-scm + python-wheel)) (home-page "https://github.com/vtraag/louvain") (synopsis "Community detection in large networks") (description diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm index 18f4fc147d..67cee5a4ef 100644 --- a/gnu/packages/graphviz.scm +++ b/gnu/packages/graphviz.scm @@ -160,7 +160,9 @@ interfaces for other technical domains.") python-mock python-pytest python-pytest-cov - python-pytest-mock)) + python-pytest-mock + python-setuptools + python-wheel)) (home-page "https://github.com/xflr6/graphviz") (synopsis "Simple Python interface for Graphviz") (description diff --git a/gnu/packages/license.scm b/gnu/packages/license.scm index c562f70498..020f36b015 100644 --- a/gnu/packages/license.scm +++ b/gnu/packages/license.scm @@ -188,12 +188,13 @@ belonging to various licenses.") (add-before 'check 'chdir (lambda _ (chdir "/tmp")))))) - (native-inputs (list python-poetry-core python-pytest)) + (native-inputs (list python-poetry-core python-pytest python-wheel)) (inputs (list python-binaryornot python-boolean.py python-debian python-jinja2 - python-license-expression)) + python-license-expression + python-setuptools)) ; For pkg_resources. (home-page "https://reuse.software/") (synopsis "Provide and verify copyright and licensing information") (description diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 6eaf74e087..a14655e5c0 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1038,7 +1038,7 @@ and not test_wmt22_references") python-portalocker python-regex python-tabulate)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/mjpost/sacrebleu") (synopsis "Compute shareable, comparable, and reproducible BLEU, chrF, and TER scores") @@ -1079,7 +1079,7 @@ unsupervised text tokenizer.") (build-system pyproject-build-system) ;; This package depends on spacy, which depends on this package. (arguments (list #:tests? #false)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://spacy.io") (synopsis "Legacy registered functions for spaCy backwards compatibility") (description @@ -1100,7 +1100,7 @@ compatibility.") (build-system pyproject-build-system) ;; This package depends on spacy, which depends on this package. (arguments (list #:tests? #false)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/explosion/spacy-loggers") (synopsis "Logging utilities for SpaCy") (description "This package provides logging utilities for the SpaCy @@ -1952,6 +1952,8 @@ for scientific computing and data science (e.g. BLAS and OpenMP).") python-pandas python-pytest python-pytest-cov + python-setuptools + python-wheel tensorflow)) (home-page "https://github.com/scikit-learn-contrib/imbalanced-learn") (synopsis "Toolbox for imbalanced dataset in machine learning") @@ -2132,7 +2134,9 @@ standard feature selection algorithms.") (list python-pytest python-pytest-lazy-fixture python-pytorch - python-torchvision)) + python-torchvision + python-setuptools + python-wheel)) (home-page "https://cleanlab.ai") (synopsis "Automatically find and fix dataset issues") (description @@ -2164,7 +2168,7 @@ data by providing clean labels during training.") python-scipy python-tqdm)) (native-inputs - (list python-pytest)))) + (list python-pytest python-setuptools python-wheel)))) (define-public python-cma (package @@ -2205,7 +2209,7 @@ and a few related numerical optimization tools.") (base32 "17bk60mhkglz6s7wz6xcyhw1h4mvghc1iid0805dra7jdyafwrfn")) (file-name (git-file-name name version)))) (build-system pyproject-build-system) - (native-inputs (list python-hypothesis)) + (native-inputs (list python-hypothesis python-setuptools python-wheel)) (propagated-inputs (list python-numpy)) (home-page "https://github.com/CyberAgentAILab/cmaes") (synopsis "CMA-ES implementation for Python") @@ -2371,13 +2375,15 @@ interactive learning.") python-networkx python-numpy python-scipy + python-setuptools ; For pkg_resources. python-six python-tqdm)) (native-inputs (list python-black python-nose python-pymongo - python-pytest)) + python-pytest + python-wheel)) (home-page "https://hyperopt.github.io/hyperopt/") (synopsis "Library for hyperparameter optimization") (description "Hyperopt is a Python library for serial and parallel @@ -3945,7 +3951,8 @@ These include a barrier, broadcast, and allreduce.") ;; nor is examples/plot_quantum.py " and not test_file_is_generated")))) (propagated-inputs (list python-jsmin python-numpy python-scipy)) - (native-inputs (list python-pytest python-pytest-cov python-sphinx)) + (native-inputs (list python-pytest python-pytest-cov python-sphinx + python-setuptools python-wheel)) (home-page "https://github.com/tensorly/tensorly") (synopsis "Tensor learning in Python") (description @@ -5015,6 +5022,7 @@ as torchvision, torchtext, and others.") (lambda _ (delete-file "readchar/_win_read.py")))))) (propagated-inputs (list python-setuptools)) + (native-inputs (list python-wheel)) (home-page "https://github.com/magmax/python-readchar") (synopsis "Library to easily read single chars and key strokes") (description "This package provides a Python library to easily read single @@ -5253,7 +5261,7 @@ implementations and an easy-to-use API to create custom metrics. It offers: python-pillow-simd python-pytorch)) (native-inputs - (list which python-pytest)) + (list which python-pytest python-setuptools python-wheel)) (home-page "https://pytorch.org/vision/stable/index.html") (synopsis "Datasets, transforms and models specific to computer vision") (description @@ -5907,7 +5915,7 @@ fi" ;; Required by codegen. python-setuptools python-sympy)) - (native-inputs (list python-pytest python-pytest-xdist)) + (native-inputs (list python-pytest python-pytest-xdist python-wheel)) (home-page "https://briansimulator.org/") (synopsis "Clock-driven simulator for spiking neural networks") (description diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index de8e886485..8867f1f132 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -5364,7 +5364,8 @@ access to BLIS implementations via traditional BLAS routine calls.") (invoke "python" "setup.py" "build_ext" "--inplace" "-j" (number->string (parallel-job-count)))))))) (propagated-inputs (list python-numpy)) - (native-inputs (list python-cython python-pytest)) + (native-inputs (list python-cython python-pytest + python-setuptools python-wheel)) (home-page "https://github.com/explosion/cython-blis") (synopsis "Blis as a self-contained C-extension for Python") (description diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm index ad9af078eb..7d1beb5c49 100644 --- a/gnu/packages/monitoring.scm +++ b/gnu/packages/monitoring.scm @@ -326,7 +326,7 @@ solution (server-side)"))) (string-append #$output "/share/doc/" #$name "/html"))))))) (native-inputs - (list python-pytest python-sphinx)) + (list python-pytest python-sphinx python-setuptools python-wheel)) (inputs (list ncurses python-requests)) (home-page "https://github.com/unioslo/zabbix-cli") diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index 40747686c4..3d2fdcce78 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -1100,7 +1100,8 @@ and not test_conda_root_outside_root_environment")) (add-before 'check 'set-HOME (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs - (list python-clyent python-nbformat python-pyyaml python-requests)) + (list python-clyent python-nbformat python-pyyaml python-requests + python-setuptools)) (native-inputs (list python-coverage python-dateutil @@ -1108,7 +1109,8 @@ and not test_conda_root_outside_root_environment")) python-mock python-pillow python-pytest - python-pytz)) + python-pytz + python-wheel)) (home-page "https://github.com/Anaconda-Platform/anaconda-client") (synopsis "Anaconda Cloud command line client library") (description diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm index b7cfca2eec..891738ee0c 100644 --- a/gnu/packages/potassco.scm +++ b/gnu/packages/potassco.scm @@ -470,7 +470,7 @@ directly from the python command line."))) (("self\\.assertTrue\\(os_called\\)" all) (string-append "# " all)))))))) (propagated-inputs (list python-clingo)) - (native-inputs (list python-typing-extensions)) + (native-inputs (list python-typing-extensions python-setuptools python-wheel)) (home-page "https://potassco.org") (synopsis "Object relational mapping to clingo") (description "@acronym{Clorm, Clingo ORM} provides an @acronym{ORM, @@ -532,6 +532,7 @@ the most probable model as well as finding all models and their probabilities.") "1q6hlh4b5hsa4n5agvmfa9rhsxfd2g6kpl4b9kfccwbmf6dh51k6")))) (build-system pyproject-build-system) (propagated-inputs (list python-clingo)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://potassco.org/") (synopsis "Solve dynamic temporal logic programs") (description "This package provides a system to solve dynamic temporal @@ -559,8 +560,10 @@ logic programs based on clingo.") python-imageio python-jinja2 python-jsonschema - python-networkx)) - (native-inputs (list dot2tex graphviz python-pylint python-pytest)) + python-networkx + python-setuptools)) + (native-inputs (list dot2tex graphviz python-pylint python-pytest + python-wheel)) (home-page "https://github.com/potassco/clingraph") (synopsis "Visualizer for graphs defined as logic programs") (description diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm index d47b67fa61..8ca730df3c 100644 --- a/gnu/packages/protobuf.scm +++ b/gnu/packages/protobuf.scm @@ -385,7 +385,9 @@ any memory-restricted system.") (list python-grpc-stubs python-grpcio-tools python-pytest - python-typing-extensions)) + python-typing-extensions + python-setuptools + python-wheel)) (propagated-inputs (list protobuf python-protobuf diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm index 71f9e5c7da..2108c3db17 100644 --- a/gnu/packages/python-build.scm +++ b/gnu/packages/python-build.scm @@ -206,7 +206,7 @@ Python file, so it can be easily copied into your project.") (build-system pyproject-build-system) (arguments (list #:build-backend "setuptools.build_meta" #:tests? #f)) ;keep dependencies to a minimum - (native-inputs (list python-wheel)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/pypa/trove-classifiers") (synopsis "Canonical source for classifiers on PyPI") (description "This package is the canonical source for classifiers use on @@ -656,6 +656,7 @@ specified by PEP 517, @code{flit_core.buildapi}.") ;; builder instead. #:build-backend "setuptools.build_meta")) (propagated-inputs (list python-flit-core python-setuptools-scm python-tomli)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://gitlab.com/WillDaSilva/flit_scm") (synopsis "PEP 518 build backend combining flit_core and setuptools_scm") (description "This package provides a PEP 518 build backend that uses diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index fb83031094..955ef0dcb4 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -722,8 +722,10 @@ running the tests.") ;; Requiring git available. " and not test_generate_diff_basic")))) (native-inputs - (list python-numpy python-pytest python-setuptools-scm)) - (home-page "https://github.com/scientific-python/pytest-doctestplus") + (list python-numpy python-pytest python-setuptools python-setuptools-scm + python-wheel)) + (propagated-inputs (list python-setuptools)) ;for pkg_resources + (home-page "https://github.com/astropy/pytest-doctestplus") (synopsis "Pytest plugin with advanced doctest features") (description "This package contains a plugin for the Pytest framework that provides @@ -772,7 +774,9 @@ for interactively selecting and running Pytest tests.") (list python-pytest python-pytest-cov python-pytest-doctestplus - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://github.com/astropy/pytest-filter-subpackage") (synopsis "Pytest plugin for filtering based on sub-packages") (description @@ -885,7 +889,8 @@ were inadvertently left open at the end of a unit test.") "not test_default_behavior" " and not test_strict_with_decorator")))) (native-inputs - (list python-pytest python-setuptools-scm)) + (list python-pytest python-setuptools python-setuptools-scm + python-wheel)) (propagated-inputs (list python-packaging)) (home-page "https://github.com/astropy/pytest-remotedata") @@ -979,7 +984,9 @@ framework and makes it easy to undo any monkey patching. The fixtures are: (list #:test-flags #~(list "-m" "mpl_image_compare"))) (native-inputs - (list python-pytest)) + (list python-pytest + python-setuptools + python-wheel)) (propagated-inputs (list python-jinja2 python-matplotlib @@ -1964,7 +1971,8 @@ the implementation of that name.") (("def test_memory_profiler") "def __off_test_memory_profiler"))))))) (native-inputs - (list python-pytest python-pytest-fixture-config python-safety)) + (list python-pytest python-pytest-fixture-config python-safety + python-setuptools python-wheel)) (propagated-inputs (list python-psutil)) (home-page "https://github.com/pythonprofilers/memory_profiler") (synopsis "Memory profiler for Python") @@ -2457,7 +2465,7 @@ tests at one time.") (native-inputs (list python-pbr python-ddt python-pytest)) (propagated-inputs - (list python-aiohttp)) + (list python-aiohttp python-setuptools)) (home-page "https://github.com/pnuckowski/aioresponses") (synopsis "Mock out requests made by ClientSession from aiohttp package") (description @@ -2705,7 +2713,9 @@ which make writing and running functional and integration tests easier.") (native-inputs (list python-jinja2 python-pytest - python-tox)) + python-tox + python-setuptools + python-wheel)) (home-page "https://nox.thea.codes/") (synopsis "Flexible test automation") (description @@ -2859,7 +2869,8 @@ parametrize. This plugin allows you to use all four.") (base32 "1ncpd74hmsz4sadvjg99fnfscxpgh3mc2siini0dhxzwgwdkk5i7")))) (build-system pyproject-build-system) (propagated-inputs (list python-httpx)) - (native-inputs (list python-pytest python-pytest-asyncio)) + (native-inputs (list python-pytest python-pytest-asyncio python-setuptools + python-wheel)) (home-page "https://colin-b.github.io/pytest_httpx/") (synopsis "Pytest plugin to mock httpx") (description "This package provides a pytest fixture to mock httpx @@ -2936,7 +2947,8 @@ running acceptance tests on headless servers.") ;; skip test that uses python-pint ;; pint has many dependencies "not test_whitelists_with_python"))))))) - (native-inputs (list python-pytest python-pytest-cov)) + (native-inputs (list python-pytest python-pytest-cov + python-setuptools python-wheel)) (propagated-inputs (list python-toml)) (home-page "https://github.com/jendrikseipp/vulture") (synopsis "Find dead Python code") diff --git a/gnu/packages/python-compression.scm b/gnu/packages/python-compression.scm index 96e607bfe9..80d4a70114 100644 --- a/gnu/packages/python-compression.scm +++ b/gnu/packages/python-compression.scm @@ -114,7 +114,9 @@ This Python package wraps the Blosc library.") python-hypothesis python-pyannotate python-pytest - python-pytest-cov)) + python-pytest-cov + python-setuptools + python-wheel)) (home-page "https://github.com/miurahr/multivolume") (synopsis "Treat multiple files as one") (description "MultiVolumefile is a Python library that provides a @@ -249,7 +251,9 @@ following algorithms are available: python-hypothesis python-pytest python-pytest-cov - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://codeberg.org/miurahr/pybcj") (synopsis "BCJ filter library") (description "In data compression, BCJ, short for Branch-Call-Jump, refers @@ -309,6 +313,7 @@ Jump conversion filter by CFFI for Python.") (setenv "USE_SHARED_BROTLI" "1")))))) (propagated-inputs (list python-cffi)) (inputs (list brotli)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/python-hyper/brotlicffi") (synopsis "Python CFFI bindings to the Brotli library") (description "This package provides Python CFFI bindings to the Brotli @@ -330,7 +335,9 @@ library.") (native-inputs (list python-pyannotate python-pytest - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://pypi.org/project/inflate64/") (synopsis "deflate64 compression/decompression library") (description "The @code{inflate64} package provides @code{Deflater} and @@ -359,7 +366,7 @@ compression algorithm.") (add-after 'unpack 'use-dynamic-linking (lambda _ (setenv "PYTHON_ISAL_LINK_DYNAMIC" "1")))))) (inputs (list isa-l)) - (native-inputs (list python-cython)) + (native-inputs (list python-cython python-setuptools python-wheel)) (home-page "https://github.com/pycompression/python-isal") (synopsis "Python bindings for the ISA-L compression library") (description @@ -405,7 +412,9 @@ headers compressed with QPACK.") python-pytest-benchmark python-pytest-cov python-pytest-timeout - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://github.com/miurahr/pyppmd") (synopsis "PPMd compression/decompression library") (description "Pyppmd provides classes and functions for compressing and @@ -467,6 +476,7 @@ several possible methods.") python-texttable)) (native-inputs (list python-setuptools + python-wheel python-setuptools-scm python-coverage python-coveralls diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm index d25059c86b..1b14b8bc87 100644 --- a/gnu/packages/python-crypto.scm +++ b/gnu/packages/python-crypto.scm @@ -299,7 +299,9 @@ do what is needed for client/server Kerberos authentication based on (native-inputs (list python-toml python-pytest - python-setuptools-scm)) + python-setuptools + python-setuptools-scm + python-wheel)) (propagated-inputs (list python-importlib-metadata python-jaraco-classes @@ -533,6 +535,7 @@ def contents() -> str: "17m1azxfc3w0390jp9mkx1v0k3xfv4v1lrgch4hvbbm77s0z42j4")))) (build-system pyproject-build-system) (arguments (list #:tests? #f)) ; No tests included. + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/pyca/cryptography") (synopsis "Test vectors for the cryptography package") (description @@ -578,7 +581,9 @@ def contents() -> str: python-pretend python-pytest ;for subtests python-pytest-benchmark - python-pytest-subtests)) + python-pytest-subtests + python-setuptools + python-wheel)) (inputs (list python-cryptography-rust)) (propagated-inputs (list python-cffi)) (home-page "https://github.com/pyca/cryptography") @@ -1079,7 +1084,7 @@ provides drop-in compatibility with PyCrypto."))) ;; certificates. #:tests? #f)) (inputs (list openssl)) - (native-inputs (list swig)) + (native-inputs (list swig python-setuptools python-wheel)) (home-page "https://gitlab.com/m2crypto/m2crypto") (synopsis "Python crypto and TLS toolkit") (description "@code{M2Crypto} is a complete Python wrapper for OpenSSL @@ -1266,7 +1271,8 @@ derivation function.") (base32 "0d4x84crbz0a17d8gi90z6zlxwm9pslc65rx0cdw2797ra360v3f")))) (build-system pyproject-build-system) - (native-inputs (list python-idna python-pytest)) + (native-inputs (list python-idna python-pytest python-setuptools + python-wheel)) (propagated-inputs (list python-attrs python-cryptography python-pyasn1 python-pyasn1-modules python-six)) (home-page "https://service-identity.readthedocs.io/") @@ -1497,6 +1503,8 @@ items and collections, editing items, locking and unlocking collections python-pytest python-pytest-cov python-service-identity + python-setuptools + python-wheel python-zipp)) (propagated-inputs (list python-cryptography diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 82089da775..493e7680ce 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -367,9 +367,12 @@ routines such as routines for numerical integration and optimization.") (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-dask - python-numpy)) + python-numpy + python-click)) (native-inputs (list python-cython + python-setuptools + python-wheel ;; The following are all needed for the tests htslib python-h5py @@ -599,7 +602,7 @@ swarm algorithm.") python-scikit-learn python-scipy)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://scikit-optimize.github.io/") (synopsis "Sequential model-based optimization toolbox") (description "Scikit-Optimize, or @code{skopt}, is a simple and efficient @@ -1663,7 +1666,7 @@ multiple deep learning frameworks.") (string-append "not test_datetime_conversion_warning" " and not test_timedelta_conversion_warning")))) (native-inputs - (list python-setuptools-scm python-pytest)) + (list python-setuptools python-setuptools-scm python-pytest python-wheel)) (propagated-inputs (list python-numpy python-packaging python-pandas)) (home-page "https://github.com/pydata/xarray") @@ -1830,7 +1833,9 @@ parentdir_prefix = pytensor- (native-inputs (list python-cython python-pytest python-pytest-mock - python-versioneer)) + python-versioneer + python-setuptools + python-wheel)) (propagated-inputs (list python-cons python-etuples python-filelock @@ -2690,7 +2695,9 @@ aggregated sum and more.") python-pandas python-pytest python-pytest-cov + python-setuptools python-setuptools-scm + python-wheel tzdata-for-tests)) (home-page "https://github.com/has2k1/plotnine") (synopsis "Grammar of Graphics for Python") @@ -3378,7 +3385,8 @@ and from numpy arrays.") "0mrm4rd6x1sm6hkvhk20mkqp9q53sl3lbvq6hqzyymkw1iqq6bhy")))) (build-system pyproject-build-system) (propagated-inputs (list python-lxml python-six)) - (native-inputs (list python-pytest python-numpy python-tables)) + (native-inputs (list python-pytest python-numpy python-tables + python-setuptools python-wheel)) (home-page "https://libneuroml.readthedocs.org/en/latest/") (synopsis "Python library for working with NeuroML descriptions of neuronal models") diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 1363e6ccdf..91b3a3d86d 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -429,7 +429,8 @@ by calling @code{FrozenList.freeze}.") (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "tests"))) (propagated-inputs (list python-frozenlist)) - (native-inputs (list python-pytest python-pytest-asyncio python-pytest-cov)) + (native-inputs (list python-pytest python-pytest-asyncio python-pytest-cov + python-setuptools python-wheel)) (home-page "https://github.com/aio-libs/aiosignal") (synopsis "Callback manager for Python @code{asyncio} projects") (description "This Python module provides @code{Signal}, an abstraction to @@ -750,7 +751,9 @@ WSGI. This package includes libraries for implementing ASGI servers.") python-httpx python-pytest python-pytest-asyncio - python-starlette)) + python-starlette + python-setuptools + python-wheel)) (home-page "https://github.com/simonw/asgi-csrf") (synopsis "ASGI middleware for protecting against CSRF attacks") (description "This Asynchronous Server Gateway Interface (ASGI) @@ -791,7 +794,9 @@ that is then compared to a @code{csrftoken} hidden form field or a (native-inputs (list python-pytest python-pytest-asyncio python-pytest-trio - python-starlette)) + python-starlette + python-setuptools + python-wheel)) (propagated-inputs (list python-sniffio)) (home-page "https://github.com/florimondmanca/asgi-lifespan") (synopsis "Programmatic startup/shutdown of ASGI apps") @@ -937,7 +942,9 @@ Model} (SAM) templates into AWS CloudFormation templates.") python-pytest-benchmark python-requests python-sqlalchemy - python-webtest)) + python-webtest + python-setuptools + python-wheel)) (propagated-inputs (list python-aiohttp python-botocore @@ -1274,7 +1281,9 @@ over a different origin than that of the web application.") python-pytest-randomly python-pytest-timeout python-pytest-xdist - python-six)) + python-six + python-setuptools + python-wheel)) (home-page "https://github.com/httplib2/httplib2") (synopsis "Comprehensive HTTP client library") (description @@ -1670,7 +1679,7 @@ for use in Python programs that implement HTTP/2.") (base32 "17b97c56y31hi0n0x0cb5a87x4xr9jijf2y06pzj0977k6zgn6cg")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/python-hyper/h11") (synopsis "Pure-Python, bring-your-own-I/O implementation of HTTP/1.1") (description @@ -2126,7 +2135,9 @@ is Python’s.") python-pytest-socket python-requests-mock python-setuptools-scm - python-tox)) + python-tox + python-setuptools + python-wheel)) (home-page "https://omnipathdb.org/") (synopsis "Python client for the OmniPath web service") (description "This package provides a Python client for the OmniPath web @@ -2156,7 +2167,7 @@ service.") (propagated-inputs (list python-aiohttp python-requests python-tqdm python-typing-extensions)) (native-inputs (list python-black python-pytest python-pytest-asyncio - python-pytest-mock)) + python-pytest-mock python-setuptools python-wheel)) (home-page "https://github.com/openai/openai-python") (synopsis "Python client library for the OpenAI API") (description "This package provides a Python client library for the @@ -2361,7 +2372,7 @@ for clients and servers.") "and not encutils " "and not website.logging"))))))) (native-inputs - (list python-pytest python-jaraco-test)) + (list python-pytest python-jaraco-test python-setuptools python-wheel)) (home-page "https://github.com/jaraco/cssutils") (synopsis "CSS Cascading Style Sheets library for Python") @@ -2539,7 +2550,7 @@ set out in RFC 7540 Section 5.3 (Stream Priority).") (base32 "0rahm1j9danv1l6i6as80acwv16ycihxkhrvwjiqh9drxhk5ymmd")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-h11)) (home-page "https://github.com/python-hyper/wsproto/") @@ -4182,7 +4193,7 @@ presume or force a developer to use a particular tool or library.") "178jzz6jxlxllcjqamzh5q7ahfh90m5cl1il9vmjs3xhz65z35pf")))) (build-system pyproject-build-system) (propagated-inputs (list python-brotli python-flask)) - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools-scm python-setuptools python-wheel)) (home-page "https://github.com/colour-science/flask-compress") (synopsis "Compress responses in a Flask app") (description @@ -4205,6 +4216,7 @@ headers required for a compressed response and compresses the response data.") (arguments (list #:tests? #false)) ;there are none (propagated-inputs (list python-flask)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/maxcountryman/flask-seasurf/") (synopsis "CSRF extension for Flask") (description "SeaSurf is a Flask extension for preventing cross-site @@ -4636,7 +4648,7 @@ transfers.") "flask_jwt/__init__.py") (("access_token.decode\\('utf-8'\\)") "access_token"))))))) (propagated-inputs (list python-flask python-pyjwt)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/mattupstate/flask-jwt") (synopsis "JWT token authentication for Flask apps") (description "This package implements JWT token authentication for Flask @@ -4663,7 +4675,9 @@ apps.") (native-inputs (list python-blinker python-mock - python-pytest)) + python-pytest + python-setuptools + python-wheel)) (home-page "https://www.github.com/flask-restful/flask-restful/") (synopsis "Flask module for creating REST APIs") (description @@ -5329,9 +5343,9 @@ package from WTForms. The package has been renamed to (delete-file "tests/test_proxy.py") #t)))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-nose)) + (list python-pytest python-wheel)) (propagated-inputs - (list python-six)) + (list python-six python-setuptools)) (home-page "https://pythonpaste.readthedocs.io/") (synopsis "Python web development tools, focusing on WSGI") @@ -5604,6 +5618,7 @@ with oauthlib.") python-stem python-validators python-waitress)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/benbusby/whoogle-search") (synopsis "Self-hosted, ad-free, privacy-respecting metasearch engine") (description @@ -5701,7 +5716,7 @@ ecosystem.") ;; Pretend to be a CI system to skip flaky tests. (setenv "CI" "true")))))) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-idna)) (home-page "https://github.com/python-hyper/hyperlink") @@ -6466,7 +6481,9 @@ and serve updated contents upon changes to the directory.") python-pytest-httpbin python-pytest-trio python-uvicorn - python-trustme)) + python-setuptools + python-trustme + python-wheel)) (propagated-inputs (list python-anyio python-certifi @@ -6500,7 +6517,7 @@ Some things HTTP Core does do: (package/inherit python-httpcore (name "python-httpcore-bootstrap") (arguments (list #:tests? #f)) - (native-inputs '())))) + (native-inputs (list python-setuptools python-wheel))))) (define-public python-httpx (package @@ -6544,7 +6561,9 @@ Some things HTTP Core does do: python-trio python-trio-typing python-trustme - python-uvicorn)) + python-uvicorn + python-setuptools + python-wheel)) (propagated-inputs (list python-charset-normalizer python-brotli @@ -6776,7 +6795,7 @@ major web browsers.") "/include/rapidjson" "'")) (("if not os.path.isdir.*") "if False:"))))))) (native-inputs - (list rapidjson python-pytest python-pytz)) + (list rapidjson python-pytest python-pytz python-setuptools python-wheel)) (home-page "https://github.com/python-rapidjson/python-rapidjson") (synopsis "Python wrapper around rapidjson") (description "This package provides a python wrapper around rapidjson.") diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index ff507e1855..3c29a26cf1 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -480,7 +480,8 @@ similar XML files, in the same way the @command{diff} utility does it.") (base32 "04hnrdcf03g1s0x3sr72sh9gnszz6kyfsl9dg8a4n0zvvhn6z5yz")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-pytest-cov python-pytest-asyncio)) + (list python-pytest python-pytest-cov python-pytest-asyncio + python-setuptools python-wheel)) (propagated-inputs (list python-typing-extensions)) (home-page "https://github.com/aio-libs/janus/") (synopsis @@ -943,6 +944,7 @@ and variables you'll need already imported and created. (substitute* "setup.py" ((".\\*\"") "\""))))))) (propagated-inputs (list python-numpy python-scipy)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/joachimwolff/fit_nbinom") (synopsis "Negative binomial maximum likelihood estimator") (description "This package provides an implementation in Python using @@ -961,7 +963,8 @@ scipy and numpy of negative binomial maximum likelihood estimation.") "0523jrzjj29kxpdllmfhrfj9kysi9mphp2m7ippjkn5b07i1g2pd")))) (build-system pyproject-build-system) (propagated-inputs (list python-six)) - (native-inputs (list python-pytest python-pytest-runner)) + (native-inputs (list python-pytest python-pytest-runner + python-setuptools python-wheel)) (home-page "https://github.com/Chilipp/docrep") (synopsis "Python package for docstring repetition") (description "Docrep is the documentation repetition module. This module @@ -1039,6 +1042,7 @@ features of the Python's built-in dict.") (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;there are none (propagated-inputs (list python-matplotlib python-numpy)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/Phlya/adjustText") (synopsis "Adjust text position in matplotlib plots to minimize overlaps") (description @@ -1200,6 +1204,7 @@ HoloViews, and Datashader.") "196ins0m7f90xz5dw764dlx060ziqbcydqzzq40b4ir5858baf3r")))) (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;the tests are not run automatically + (native-inputs (list python-setuptools python-wheel)) (home-page "https://gitlab.com/dslackw/colored") (synopsis "Simple library for color and formatting to terminal") (description "This is a very simple Python library for color and @@ -1222,7 +1227,8 @@ names for 256 color terminal setups.") (base32 "0kyy9qhvrb5m9h8xmri7c88i0k1g5qc7017anw39gx44an7mn33y")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage python-flake8 python-pytest)) + (list python-coverage python-flake8 python-pytest python-setuptools + python-wheel)) (propagated-inputs (list python-colorama)) (home-page "http://github.com/timofurrer/colorful") @@ -1632,7 +1638,8 @@ Specification v2.0 (PEP 249).") (base32 "0gxkw607nrd67ck4w8jri9vfrm5g60qvp8b134m8zkiphbxjnx0l")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest python-jinja2 python-pygments)) + (native-inputs (list python-pytest python-jinja2 python-pygments + python-setuptools python-wheel)) (arguments (list ;; Some tests fail, presumably because of slight version mismatches of @@ -1739,6 +1746,7 @@ different units.") "1gpy1z2i4vq1mcrhysxahz4339pbl9rzk58rf5m5gf5ym9xji6ii")))) (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;there are none + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/piccolomo/plotext") (synopsis "Plots in the terminal") (description "Plotext lets you plot directly to the terminal.") @@ -1893,6 +1901,8 @@ generator MkDocs.") python-matplotlib python-pandas python-poetry-core + python-setuptools + python-wheel python-pytest)) (home-page "https://github.com/crflynn/skranger") (synopsis "Python bindings for C++ ranger random forests") @@ -2060,7 +2070,7 @@ threads.") (build-system pyproject-build-system) (native-inputs (list python-setuptools-scm python-tornado-6 python-typeguard - python-pytest)) + python-pytest python-setuptools python-wheel)) (home-page "https://github.com/jd/tenacity") (synopsis "Retrying library for python") (description "Tenacity is a general-purpose python library to simplify the @@ -2216,9 +2226,8 @@ Python library and command line interface.") ;; which is patched above. (delete-file "tests/test_config.py")))))) (native-inputs - (list python-pytest - python-pytest-xdist - python-scikit-image)) + (list python-pytest python-pytest-xdist + python-scikit-image python-setuptools python-wheel)) (inputs (list openjpeg ; glymur/lib/openjp2.py libtiff)) ; glymur/lib/tiff.py @@ -2509,7 +2518,7 @@ utilities such as ping(1).") python-click-plugins python-cligj python-numpy - python-setuptools + python-setuptools ; For pkg_resources. python-snuggs)) (native-inputs (list gdal python-boto3 @@ -2518,7 +2527,8 @@ utilities such as ping(1).") python-packaging python-pytest python-pytest-cov - python-shapely)) + python-shapely + python-wheel)) (home-page "https://github.com/rasterio/rasterio") (synopsis "Fast and direct raster I/O for use with Numpy and SciPy") (description "This package implements fast and direct raster I/O for use @@ -2545,7 +2555,7 @@ with Numpy and SciPy.") ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) (native-inputs - (list python-cython python-matplotlib python-pytest)) + (list python-cython python-matplotlib python-pytest python-setuptools python-wheel)) (inputs (list geos)) (propagated-inputs @@ -2831,7 +2841,9 @@ NetCDF files can also be read and modified. Python-HDF4 is a fork of (native-inputs (list python-netcdf4 python-pytest - python-setuptools-scm)) + python-setuptools + python-setuptools-scm + python-wheel)) (propagated-inputs (list python-h5py python-packaging)) (home-page "https://h5netcdf.org") @@ -3173,7 +3185,7 @@ and lookups.") (base32 "0lvshl2fhwa568d3y3vmx45hdp8gk5w9yl3b2q5d66r5vqn1sfwl")))) (build-system pyproject-build-system) (native-inputs - (list python-setuptools-scm python-pytest)) + (list python-setuptools-scm python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-boolean.py)) (home-page "https://github.com/nexB/license-expression") @@ -3295,7 +3307,8 @@ inter-process communication.") (base32 "058av1r760ws7z6qffsjpqa39fmdxw0s1wnyr7p50y3zclg6cyqk")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest python-setuptools-scm)) + (native-inputs (list python-pytest python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/tox-dev/py-filelock") (synopsis "Platform independent file lock") (description "@code{filelock} contains a single module implementing @@ -3556,7 +3569,8 @@ class.") ;; These tests fail with "OSError: [Errno 19] No such device". "-k" "not BasicTestUdpMulticastBusIPv"))) (propagated-inputs - (list python-msgpack python-typing-extensions python-wrapt)) + (list python-msgpack python-typing-extensions python-wrapt + python-setuptools)) (native-inputs (list ;; python-canalystii ; Not packed yet python-codecov @@ -3569,7 +3583,8 @@ class.") python-pytest python-pytest-cov python-pytest-runner - python-pytest-timeout)) + python-pytest-timeout + python-wheel)) (home-page "https://github.com/hardbyte/python-can") (synopsis "Controller Area Network (CAN) interface module for Python") (description "This package defines the @code{can} module, which provides @@ -3704,6 +3719,7 @@ a library.") (base32 "1920wbh2b7a8qn7zx2iiqbcdaax335l81a73x9pp8h11yzs2jdmh")))) (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;There are none + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/gvalkov/optparse-pretty") (synopsis "Compact help formatter for optparse") (description @@ -3914,6 +3930,7 @@ for additional processing.") ;; XXX: Fails with: "In procedure utime: No such file ;; or directory". (delete 'ensure-no-mtimes-pre-1980)))) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/fastai/fastprogress") (synopsis "Progress bar for Jupyter Notebook and console") (description @@ -4147,6 +4164,8 @@ of @code{xmlfile}.") python-pytest python-pytest-rerunfailures python-pytest-xdist + python-setuptools + python-wheel unzip (origin (method url-fetch) @@ -4509,7 +4528,9 @@ Python.") python-pytest-subtests python-responses python-tox - python-types-requests)) + python-types-requests + python-setuptools + python-wheel)) (home-page "https://github.com/omni-us/jsonargparse/") (synopsis "Implement minimal boilerplate CLIs derived from type hints") (description @@ -4738,7 +4759,7 @@ commands.") (base32 "1a4h0jpsr3wjciqg9a5kslxv65d3qqgmqgkpai4cl77wlpcxfk89")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://jiffyclub.github.io/palettable/") (synopsis "Color palettes for Python") (description "Palettable (formerly brewer2mpl) is a library of color @@ -4819,7 +4840,8 @@ syntax.") (string-append "not test_sending_empty_netstring" " and not test_sending_one_netstring" " and not test_sending_two_netstrings")))) - (native-inputs (list python-pytest python-twisted)) + (native-inputs (list python-pytest python-twisted python-setuptools + python-wheel)) (home-page "https://launchpad.net/parsley") (synopsis "Parsing and pattern matching Python library") (description @@ -4970,7 +4992,9 @@ PDF, PNG, EPS and SVG).") python-pytest-cov python-pytest-mypy python-pytest-timeout - python-redis)) + python-redis + python-setuptools + python-wheel)) (home-page "https://github.com/WoLpH/portalocker") (synopsis "Python library for file locking") (description "Portalocker is a library to provide an easy API to file @@ -5060,7 +5084,9 @@ and is not compatible with JSON.") python-pytest python-pytest-astropy python-pytest-cov - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://extension-helpers.readthedocs.io") (synopsis "Astropy ecosystem utilities for building and installing packages") (description @@ -5555,12 +5581,14 @@ clickgen is using @code{anicursorgen} and @code{xcursorgen} under the hood.") python-orjson python-pandas python-pytz + python-setuptools ; For pkg_resources. python-sqlalchemy python-urllib3 python-zstandard)) (native-inputs (list python-cython - python-pytest)) + python-pytest + python-wheel)) (home-page "https://github.com/ClickHouse/clickhouse-connect") (synopsis "ClickHouse database core driver for Python, Pandas, and Superset") @@ -5605,7 +5633,7 @@ well-tested and interoperable CLIs for handling GeoJSON.") "05c6cjpnf9s72gyn5dckxbmd8rf2kgdzfsl7pqzrnc1lcdl13zmv")))) (build-system pyproject-build-system) (propagated-inputs (list python-click)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/janLuke/cloup") (synopsis "Extension library for python-click") (description @@ -5733,7 +5761,8 @@ and convert DDL to BigQuery JSON schema.") (when tests? (setenv "JSON_SCHEMA_TEST_SUITE" "json") (invoke "trial" "jsonschema"))))))) - (native-inputs (list python-setuptools-scm python-twisted)) + (native-inputs (list python-setuptools-scm python-twisted + python-setuptools python-wheel)) (propagated-inputs (list python-attrs python-importlib-metadata @@ -5936,7 +5965,9 @@ memory usage and transliteration quality.") python-cryptography python-pytest python-sphinx - python-sphinx-rtd-theme)) + python-sphinx-rtd-theme + python-setuptools + python-wheel)) (home-page "https://github.com/progrium/pyjwt") (synopsis "JSON Web Token implementation in Python") (description @@ -6183,7 +6214,7 @@ work on your part.") (base32 "17f55gi55rg47nm88fn3f8851ph03dgykdp011lxr3j6hk18lyfv")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/tsutsu3/uc.micro-py") (synopsis "Unicode data files for linkify-it-py projects") (description "This package contains a micro subset of Unicode data files @@ -6205,7 +6236,7 @@ for linkify-it-py projects.") "0fg0a1lc8xbb62y9krxcp708ll58dxcwm8i7rrwpkd5sh2229f6x")))) (build-system pyproject-build-system) (propagated-inputs (list python-uc-micro-py)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/tsutsu3/linkify-it-py") (synopsis "Links recognition library with full Unicode support") (description "This is Python port of @@ -6230,7 +6261,7 @@ recognition library with full Unicode support. It has features like: "19a8dga8rnmjn5gy1cy1wdi28swbkdkypwbqikbxil6ynqcg3c20")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-setuptools-scm)) + (list python-pytest python-setuptools python-setuptools-scm python-wheel)) (home-page "https://github.com/smarie/python-makefun") (synopsis "Library to dynamically create python functions") (description "@code{makefun} helps create functions dynamically with a @@ -6909,7 +6940,9 @@ via commands such as @command{rst2man}, as well as supporting Python code.") python-flake8 python-mock python-pyparsing - python-pytest)) + python-pytest + python-setuptools + python-wheel)) (propagated-inputs (list python-lxml)) (home-page "https://github.com/python-openxml/python-docx/") @@ -7085,6 +7118,7 @@ working with Valve's VDF text format.") (base32 "1qm4xdmzd4q5pc9h5gjdpr5m7lg06k8dvqnjn7d07d3fhani8d90")))) (build-system pyproject-build-system) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/mina86/pygtrie") (synopsis "Pure Python trie data structure implementation") (description @@ -8780,7 +8814,7 @@ readable format.") (base32 "1v34xdvh6i5cn5srwicvp0i2kvv8fzsv0v9p72ng081nsczmhgvr")))) (build-system pyproject-build-system) (propagated-inputs (list python-cffi libgit2)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/libgit2/pygit2") (synopsis "Python bindings for libgit2") (description "Pygit2 is a set of Python bindings to the libgit2 shared library.") @@ -9046,7 +9080,9 @@ semantic version parser for Node.js.") (base32 "1r1lcq59v6l75wkbp7mypanr69a6fv6m58v6dw3v6b4vwz5nqg0z")))) (build-system pyproject-build-system) - (propagated-inputs (list python-appdirs python-nose python-pyyaml)) + (propagated-inputs (list python-appdirs python-nose python-pyyaml + python-setuptools)) + (native-inputs (list python-wheel)) (home-page "https://github.com/simonvh/norns") (synopsis "Simple YAML-based config module") (description "This package provides a simple YAML-based config module.") @@ -10007,7 +10043,7 @@ and therefore easier to read and write.") ;; NOTE: Any value works, the variable just has to be present. (setenv "SKIP_ONLINE" "1")))))) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (inputs (list bash-minimal)) (home-page "https://github.com/pypa/distlib") @@ -10711,10 +10747,10 @@ from FFMPEG, reliably terminating the process when done.") (delete-file "tests/test_freeimage.py")))))) (inputs (list freeimage)) (propagated-inputs - (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile)) + (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile python-setuptools)) (native-inputs (list python-black python-flake8 python-fsspec python-pytest - python-pytest-cov)) + python-pytest-cov python-wheel)) (home-page "https://imageio.github.io/") (synopsis "Library for reading and writing a wide range of image data") (description @@ -11907,7 +11943,9 @@ releases.") python-pytest-cov python-pytest-enabler python-pytest-flake8 - python-pytest-mypy)) + python-pytest-mypy + python-setuptools + python-wheel)) (home-page "https://github.com/jaraco/jaraco.test") (synopsis "Testing support by jaraco") (description "This package provides testing support by jaraco.") @@ -12350,6 +12388,7 @@ container data structures in Python).") python-pyzmq python-tornado-6 python-traitlets)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://jupyter.org/") (synopsis "Jupyter protocol implementation and client libraries") (description @@ -12387,7 +12426,9 @@ installing @code{kernelspec}s for use with Jupyter frontends.") python-pytest-timeout python-async-generator python-ipython - python-ipykernel-bootstrap)) + python-ipykernel-bootstrap + python-setuptools + python-wheel)) (properties (alist-delete 'hidden? (package-properties base)))))) (define-public python-ipykernel @@ -12463,7 +12504,9 @@ installing @code{kernelspec}s for use with Jupyter frontends.") ;; and causes deprecation warnings. Using the bootstrap variant ;; avoids that. python-pytest-bootstrap - python-pytest-timeout)) + python-pytest-timeout + python-setuptools + python-wheel)) (home-page "https://ipython.org") (synopsis "IPython Kernel for Jupyter") (description "This package provides the IPython kernel for Jupyter.") @@ -12482,7 +12525,7 @@ installing @code{kernelspec}s for use with Jupyter frontends.") ;; left out here to break the cycle. #:phases #~(modify-phases %standard-phases (delete 'sanity-check)))) - (native-inputs '()) + (native-inputs (list python-setuptools python-wheel)) (propagated-inputs (modify-inputs (package-propagated-inputs parent) (replace "python-jupyter-client" python-jupyter-client-bootstrap) @@ -12552,7 +12595,9 @@ callback signature using a prototype function.") python-unidecode)) (native-inputs (list python-pytest - python-pytest-cov)) + python-pytest-cov + python-setuptools + python-wheel)) (home-page "https://github.com/titipata/pubmed_parser") (synopsis "Parser for Pubmed Open-Access Subset and MEDLINE XML repository") (description @@ -13917,6 +13962,7 @@ falling into the Python interpreter.") "{ name = \"Maarten van der Sande\", email = \"maartenvandersande@hotmail.com\"}") (("license = \"MIT\"") "license = { file = \"LICENSE\"}"))))))) (propagated-inputs (list python-numba python-numpy python-pandas)) + (native-inputs (list python-setuptools python-wheel python-toml)) (home-page "https://github.com/Maarten-vd-Sande/qnorm") (synopsis "Quantile normalization") (description "This tool implements quantile normalization. It properly @@ -13977,7 +14023,9 @@ low-level X clients. It is written entirely in Python.") (build-system pyproject-build-system) (native-inputs (list python-pytest - python-six)) ; required for conversion, not at run-time + python-setuptools + python-six ; required for conversion, not at run-time + python-wheel)) (home-page "https://docs.python.org/3/library/functools.html#functools.singledispatch") (synopsis "Backport of singledispatch feature from Python 3.4") @@ -14403,7 +14451,8 @@ plugin for flake8 to check PEP-8 naming conventions.") "0yvs59ymz5gdix34a95wxlxvk9bnvjgrzsnmnc3ws7whpfv3yasm")))) (build-system pyproject-build-system) (propagated-inputs (list python-packaging)) - (native-inputs (list python-pypa-build python-pytest python-tomli)) + (native-inputs (list python-pypa-build python-pytest python-setuptools + python-tomli python-wheel)) (home-page "https://github.com/FFY00/python-pyproject-metadata") (synopsis "Dataclass for PEP 621 metadata") (description "This project does not implement the parsing of @@ -15218,7 +15267,8 @@ the @code{sendfile(2)} system call.") ;; Using Pytest instead of the Makefile causes the command line tests to ;; fail on unknown Pytest arguments. (arguments (list #:test-flags #~(list "-k" "not TestCommandLineParser"))) - (native-inputs (list python-psutil python-pytest)) + (native-inputs (list python-psutil python-pytest python-setuptools + python-wheel)) (propagated-inputs (list python-pyopenssl python-pysendfile)) (home-page "https://github.com/giampaolo/pyftpdlib/") (synopsis "Asynchronous and scalable Python FTP server library") @@ -16009,7 +16059,8 @@ asyncio.") "0yv1wayrw9g6k0c2f721kha7wsv0s1fdlxpf5x7f34iqzq9z272h")))) (build-system pyproject-build-system) (propagated-inputs (list python-numpy python-pyparsing)) - (native-inputs (list python-hypothesis python-pytest)) + (native-inputs (list python-hypothesis python-pytest python-setuptools + python-wheel)) (home-page "https://github.com/mapbox/snuggs") (synopsis "Snuggs are S-expressions for Numpy") (description "Snuggs are S-expressions for Numpy.") @@ -16465,7 +16516,7 @@ domains support.") (build-system pyproject-build-system) (arguments (list #:tests? #f)) - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools python-setuptools-scm python-wheel)) (home-page "https://github.com/jaraco/path") (synopsis "Object-oriented file system path manipulation library") (description "@code{path} (formerly @code{path.py}) implements path @@ -17096,7 +17147,9 @@ significantly better performance.") python-pylint python-pytest python-pytest-benchmark - python-pytest-cache)) + python-pytest-cache + python-setuptools + python-wheel)) (home-page "https://github.com/horejsek/python-fastjsonschema") (synopsis @@ -17179,7 +17232,7 @@ systems, as a command line tool, and as a Python library.") (delete-file-recursively "bleach/_vendor/html5lib"))))) (build-system pyproject-build-system) (propagated-inputs (list python-html5lib python-tinycss2)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/mozilla/bleach") (synopsis "Whitelist-based HTML-sanitizing tool") (description "Bleach is an easy whitelist-based HTML-sanitizing tool.") @@ -17715,7 +17768,7 @@ simulation, statistical modeling, machine learning and much more.") (base32 "1r9ixxnish9j3dq4h0z0cwlkr4f5lgi6d8mhbzw59hbbjlmp2qhd")))) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (build-system pyproject-build-system) (arguments (list #:test-flags @@ -17917,7 +17970,7 @@ This allows one to make simple text-mode user interfaces on Unix-like systems") (build-system pyproject-build-system) (propagated-inputs (list python-pydantic python-srsly python-typing-extensions)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/explosion/confection") (synopsis "Config system for Python") (description "Confection is a lightweight library that offers a @@ -17984,7 +18037,8 @@ config files.") (propagated-inputs (list java-antlr4-runtime-python python-pydevd python-pyyaml)) - (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock)) + (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock + python-setuptools python-wheel)) (home-page "https://github.com/omry/omegaconf") (synopsis "Flexible configuration system") (description "OmegaConf is a hierarchical configuration system and @@ -18003,10 +18057,10 @@ consistent API regardless of how the configuration was created.") (base32 "1l866g1dcf2ljf8fl7ggpxk1rggry0lya4d5b264gradi1qp81p7")))) (build-system pyproject-build-system) - (native-inputs - (list python-mock python-pytest)) (propagated-inputs (list python-pyyaml)) + (native-inputs + (list python-mock python-pytest python-setuptools python-wheel)) (synopsis "Replacement for argparse") (description "A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.") @@ -19146,6 +19200,7 @@ in pure Python.") (base32 "14hwk9j5zjc8rvirw95mrb07zdnpjaxjx2mj3rnq8pnlyaa809r4")))) (build-system pyproject-build-system) + (arguments (list #:tests? #f)) ; No tests in PyPi tarball. (native-inputs (list python-poetry-core)) (home-page "https://github.com/srstevenson/xdg-base-dirs") @@ -19658,7 +19713,8 @@ synchronously (wait until ready).") python-scikit-learn python-scipy python-toolz)) - (native-inputs (list python-cython python-pytest python-setuptools-scm)) + (native-inputs (list python-cython python-pytest python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://pypi.org/project/cesium/") (synopsis "Library for time-series feature extraction and processing") (description @@ -19735,7 +19791,8 @@ ISO 8859, etc.).") (lambda _ (setenv "QT_QPA_PLATFORM" "offscreen")))))) (native-inputs - (list python-pytest python-pytest-cov python-pytest-xdist)) + (list python-pytest python-pytest-cov python-pytest-xdist + python-setuptools python-wheel)) (inputs (list qtbase-5)) (propagated-inputs @@ -19923,7 +19980,9 @@ checking library.") python-pytest python-pytest-cov python-pytest-dependency - python-tomli)) + python-tomli + python-setuptools + python-wheel)) (arguments `(#:phases (modify-phases %standard-phases @@ -21037,7 +21096,9 @@ def get_requires_for_build_sdist(config_settings=None): python-pytest-flake8 python-pytest-mypy ;; For the version number - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://github.com/jaraco/inflect") (synopsis "Correctly generate plurals, singular nouns, ordinals, indefinite articles") (description @@ -23241,7 +23302,8 @@ from the header, as well as section details and data available.") (propagated-inputs (list pigz python-isal python-typing-extensions)) (native-inputs - (list python-pytest python-pytest-timeout python-setuptools-scm)) + (list python-pytest python-pytest-timeout python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/marcelm/xopen/") (synopsis "Open compressed files transparently") (description "This module provides an @code{xopen} function that works @@ -23325,6 +23387,7 @@ efficient as possible on all supported Python versions.") "1gqfh00ics2k1sm5g46l3bi8cl5fc5d1cwzh1ylvcxvdvypklqc7")))) (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;there are none + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/noahmorrison/chevron") (synopsis "Mustache templating language renderer") (description "This package provides a Python implementation of the @@ -23377,7 +23440,9 @@ Mustache templating language renderer.") python-pyarrow python-pytest python-pytest-runner - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://www.duckdb.org") (synopsis "DuckDB embedded database") (description "DuckDB is an in-process SQL OLAP database management @@ -24236,6 +24301,7 @@ point is the point of maximum curvature.") python-jinja2 python-pluggy python-pygments + python-setuptools ; For pkg_resources. python-tomli)) (native-inputs (list python-flake8 @@ -24450,7 +24516,8 @@ while only declaring the test-specific fields.") ;; Disable tests that require internet. (list #:test-flags '(list "-k" "not net"))) (native-inputs - (list python-pytest python-testfixtures python-click python-requests)) + (list python-pytest python-testfixtures python-click python-requests + python-setuptools python-wheel)) (home-page "https://github.com/pndurette/gTTS") (synopsis "Google Translate text-to-speech interface") (description @@ -24952,7 +25019,9 @@ manipulation, or @code{stdout}.") python-mypy python-pytest python-pytz - python-simplejson)) + python-simplejson + python-setuptools + python-wheel)) (home-page "https://github.com/marshmallow-code/marshmallow") (synopsis "Convert complex datatypes to and from native Python datatypes") (description "@code{marshmallow} provides a library for converting complex @@ -25014,7 +25083,9 @@ datatypes to and from native Python datatypes.") python-marshmallow python-mypy python-pytest - python-pyyaml)) + python-pyyaml + python-setuptools + python-wheel)) (home-page "https://github.com/marshmallow-code/apispec") (synopsis "Swagger/OpenAPI specification generator") (description "@code{python-apispec} is a pluggable API specification @@ -25033,7 +25104,7 @@ Swagger.") (base32 "1wyw30402xq2a8icrsjmy9v43jyvawcjd85ccb2zicqlg4k5pcqd")))) (build-system pyproject-build-system) - (propagated-inputs (list python-apispec)) + (propagated-inputs (list python-apispec python-setuptools)) (native-inputs (list python-bottle python-flake8 @@ -25043,7 +25114,8 @@ Swagger.") python-pytest python-pyyaml python-tornado - python-tox)) + python-tox + python-wheel)) (home-page "https://github.com/marshmallow-code/apispec-webframeworks") (synopsis "Web framework plugins for apispec") (description "This package provides plugins for using @code{apispec} with @@ -25805,7 +25877,9 @@ particularly convenient for use in tests.") python-pytest-mypy python-setuptools-scm python-types-freezegun - python-types-pytz)) + python-types-pytz + python-setuptools + python-wheel)) (propagated-inputs (list python-jaraco-functools python-pytz)) (home-page "https://github.com/jaraco/tempora") (synopsis "Python date and time objects and routines") @@ -25929,7 +26003,9 @@ queue.") (list python-pytest python-pytest-asyncio python-pytest-repeat - python-pytest-timeout)) + python-pytest-timeout + python-setuptools + python-wheel)) (home-page "https://zict.readthedocs.io/en/latest/") (synopsis "Composable mutable mapping tools") (description "This package provides abstract @code{MutableMapping} classes @@ -26119,7 +26195,7 @@ files, and Makefiles.") (base32 "1q7ajgqjfivxqsqgnhp4lc4p6jxyh4zprcsdbpd6dw54inaf0av5")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/Suor/whatever") (synopsis "Make anonymous functions by partial application of operators") (description "@code{whatever} provides an easy way to make anonymous @@ -26141,7 +26217,7 @@ functions by partial application of operators.") (file-name (git-file-name name version)))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-whatever)) + (list python-pytest python-whatever python-setuptools python-wheel)) (home-page "https://github.com/Suor/funcy") (synopsis "Functional tools") (description "@code{funcy} is a library that provides functional tools. @@ -26618,7 +26694,7 @@ working with iterables.") "040i6bjqvl33j30v865shsk30s3h7f16pqwiaj5kig857dfmqm4r")))) (build-system pyproject-build-system) (propagated-inputs (list python-bitarray python-xxhash)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/joseph-fox/python-bloomfilter") (synopsis "Bloom filter") (description "This package provides a scalable Bloom filter implemented in @@ -27782,7 +27858,8 @@ tool).") python-msgpack python-typing-extensions)) (native-inputs - (list python-cython python-pytest python-setuptools-scm)) + (list python-cython python-pytest python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/zarr-developers/numcodecs") (synopsis "Buffer compression and transformation codecs") (description @@ -27908,6 +27985,7 @@ N-dimensional arrays for Python.") python-pandas python-scipy python-scikit-learn + python-setuptools ; For pkg_resources. python-zarr)) (native-inputs (list python-awkward @@ -27954,7 +28032,7 @@ object-oriented library such as @code{scikit-learn}.") (with-directory-excursion "/tmp" (invoke "nosetests" "-v")))))))) (native-inputs - (list python-nose)) + (list python-nose python-setuptools python-wheel)) (home-page "https://pypi.org/project/dill/") (synopsis "Serialize all of Python") (description "Dill extends Python's @code{pickle} module for serializing @@ -28006,6 +28084,7 @@ preload_resources\ (invoke "python" "-m" "multiprocess.tests"))))))) (propagated-inputs (list python-dill)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://pypi.org/project/multiprocess/") (synopsis "Multiprocessing and multithreading in Python") (description @@ -28318,7 +28397,8 @@ append on old values. Partd excels at shuffling operations.") (propagated-inputs (list python-aiohttp python-libarchive-c python-requests python-tqdm)) (native-inputs - (list python-pytest python-pytest-mock python-numpy)) + (list python-pytest python-pytest-mock python-numpy python-setuptools + python-wheel)) (home-page "https://github.com/intake/filesystem_spec") (synopsis "File-system specification") (description "The purpose of this package is to produce a template or @@ -28629,6 +28709,7 @@ RFC 8265 and RFC 8266.") (base32 "0ga3b0m8lfsv1m3260p83lhis52yvz3d42q8gip4gfj823849hnj")))) (build-system pyproject-build-system) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/abseil/abseil-py") (synopsis "Abseil Python common libraries") (description @@ -28933,7 +29014,8 @@ programs that do multiple things at the same time with parallelized I/O.") (sha256 (base32 "15wa66cs165wawh4pi808ac43n67b8jqddi5ppdcbkj5gfi68hpi")))) (build-system pyproject-build-system) - (native-inputs (list python-attrs python-pytest)) + (native-inputs (list python-attrs python-pytest python-setuptools + python-wheel)) (propagated-inputs (list python-mypy python-mypy-extensions python-trio python-typing-extensions)) @@ -30187,7 +30269,7 @@ scripts to load entry points more quickly.") (when tests? (invoke "python" "-m" "unittest" "discover" "-v"))))))) ;; ModuleNotFoundError: No module named 'poetry' - (native-inputs (list python-poetry-core)) + (native-inputs (list python-poetry-core python-six)) (home-page "https://github.com/vlasovskikh/funcparserlib") (synopsis "Recursive descent parsing library based on functional combinators") @@ -30463,7 +30545,9 @@ but portable.") python-pytest-cov python-pytest-mock python-pytest-sugar - python-pytest-toolbox)) + python-pytest-toolbox + python-setuptools + python-wheel)) (home-page "https://github.com/samuelcolvin/watchgod") (synopsis "Simple, modern file watching and code reload in Python") (description @@ -31771,7 +31855,7 @@ placement and scaling of SVG figures and adding markers, such as labels.") ;; Avoid python-pytest-coverage #:test-flags '(list "-c /dev/null"))) (propagated-inputs (list python-six python-wcwidth)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/jquast/blessed") (synopsis "Wrapper around terminal capabilities") (description @@ -32048,7 +32132,8 @@ It adds a simple and readable way to print stuff during development.") (list python-dateutil python-pytz python-regex python-ruamel.yaml python-tzlocal)) (native-inputs - (list python-flake8 python-pytest python-parameterized tzdata-for-tests)) + (list python-flake8 python-pytest python-parameterized tzdata-for-tests + python-setuptools python-wheel)) (arguments `(#:phases (modify-phases %standard-phases @@ -32946,7 +33031,9 @@ older versions of Python and so are packaged here.") python-sphinx python-sphinx-autobuild python-sphinx-rtd-theme - python-tox)) + python-tox + python-setuptools + python-wheel)) (home-page "https://github.com/Delgan/loguru") (synopsis "Python logging made (stupidly) simple") (description "Python logging made (stupidly) simple") @@ -35151,6 +35238,7 @@ Python, with static types.") "0cas3cjkhrvsz2rmqnhqiihy9j79wxi9xbih8jk0p9r48c2q3iyy")))) (build-system pyproject-build-system) (propagated-inputs (list python-types-urllib3)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/python/typeshed") (synopsis "Typing stubs for requests") (description "This package provides typing stubs for requests.") @@ -35183,6 +35271,7 @@ Python, with static types.") (base32 "0zcipjdnbnc8ymk8mh9n5mypa0qr03rqj98lbmahldcdrrap6md1")))) (build-system pyproject-build-system) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/python/typeshed") (synopsis "Typing stubs for urllib3") (description "This package provides typing stubs for urllib3.") @@ -35200,6 +35289,7 @@ Python, with static types.") "1vdwp1jjg27b22qxgm49v21nb8vm1iki3bfsm0fnq2rsz5alfwz2")))) (build-system pyproject-build-system) (propagated-inputs (list python-importlib-resources)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/JelleZijlstra/typeshed_client") (synopsis "Library for accessing stubs in typeshed") (description @@ -35595,7 +35685,9 @@ than trying to just split strings.") python-pytest-timeout python-mock python-numpy - python-psutil)) + python-psutil + python-setuptools + python-wheel)) (home-page "https://github.com/explosion/srsly") (synopsis "Serialization utilities for Python") (description "This package bundles some of the best Python serialization @@ -35847,7 +35939,7 @@ objects.") (base32 "1irw4sqrsgpc0ibxdv1hlx0d0jr1fqs48bj6mpfylzqkag9ywlfj")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/cgdeboer/iteround") (synopsis "Sum-safe rounding for Iterables") (description "Iteround is a standard library sum-safe rounding library for @@ -35961,7 +36053,10 @@ object, which can be useful if you want to force your objects into a table.") python-mock python-numpy python-pytest - python-pyyaml)) + python-pyyaml + python-setuptools + python-wheel + python-toml)) (home-page "https://github.com/seperman/deepdiff") (synopsis "Deep difference and search of any Python object/data") (description @@ -35990,7 +36085,9 @@ other.") (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))))) (native-inputs (list python-setuptools-scm - python-pytest)) + python-pytest + python-setuptools + python-wheel)) (home-page "https://deepmerge.readthedocs.io/en/latest/") (synopsis "Merge nested data structures") (description @@ -36442,7 +36539,7 @@ versa. Extended WKB/WKT are also supported.") (base32 "1c0xx3p3lzrlyqhmccyq9c50f8v9pqk2992gb4nl50h2yy1m3s8v")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://nedbatchelder.com/code/cog") (synopsis "Content generation tool that leverages Python") (description "Cog is a file generation tool. It allows using pieces of @@ -36892,7 +36989,10 @@ path.") python-ruamel.yaml python-slugify python-tornado - tzdata-for-tests)) + tzdata-for-tests + python-setuptools + python-wheel + python-toml)) (home-page "https://github.com/spanezz/staticsite") (synopsis "Static site generator") (description "Statistic is a static site generator based on Markdown and @@ -36985,8 +37085,9 @@ markdown-compliant strings.") (base32 "1v5c9bim8af6g8kgxp2dhm96n5vkr8sqi56w0bdh1xy49v03lw3g")))) (build-system pyproject-build-system) - (propagated-inputs (list python-pillow)) + (propagated-inputs (list python-pillow python-setuptools)) (inputs (list zbar)) + (native-inputs (list python-wheel)) (home-page "https://github.com/Polyconseil/zbarlight") (synopsis "Simple Python wrapper for the zbar barcode library") (description "Zbarlight is a simple wrapper for the zbar library. It can @@ -37005,6 +37106,7 @@ read all zbar supported codes.") "0bqkrjxp2fbz34x3wxkxji39kxinypzg8q2994sibiay29mpipxb")))) (build-system pyproject-build-system) (inputs (list openssl)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://zeroc.com") (synopsis "RPC framework") (description diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm index 1074c29063..d3780433da 100644 --- a/gnu/packages/qt.scm +++ b/gnu/packages/qt.scm @@ -3850,7 +3850,9 @@ Python.") (list python-wrapper)) (propagated-inputs (list python-tomli - python-packaging)) + python-packaging + python-setuptools + python-wheel)) (home-page "https://www.riverbankcomputing.com/software/sip/intro") (synopsis "Python binding creator for C and C++ libraries") (description diff --git a/gnu/packages/rpc.scm b/gnu/packages/rpc.scm index b70214fa79..e7d19b1ef2 100644 --- a/gnu/packages/rpc.scm +++ b/gnu/packages/rpc.scm @@ -254,7 +254,7 @@ type information of gRPC.") (inputs (list abseil-cpp-20211102.0 c-ares grpc-for-python-grpcio openssl re2 zlib)) (native-inputs - (list python-cython)) + (list python-cython python-setuptools python-wheel)) (propagated-inputs (list python-six)) (home-page "https://grpc.io") diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm index 6e66aec3f5..59002315e7 100644 --- a/gnu/packages/serialization.scm +++ b/gnu/packages/serialization.scm @@ -746,7 +746,9 @@ RPC system. Think JSON, except binary. Or think Protocol Buffers, except faste python-mypy python-pytest python-setuptools-scm - python-versioneer)) + python-versioneer + python-setuptools + python-wheel)) (propagated-inputs (list python-pyyaml python-tomli python-tomli-w)) (home-page "https://jcristharif.com/msgspec/") (synopsis "Fast serialization/validation library") diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index e280c06f2b..098a473c01 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -433,7 +433,9 @@ supported with @code{sphinx-issues}.") (propagated-inputs (list python-docutils-0.15 python-sphinx-4)) (native-inputs (list python-pytest - python-pytest-regressions)) + python-pytest-regressions + python-setuptools + python-wheel)) (home-page "https://github.com/executablebooks/sphinx-panels") (synopsis "Sphinx extension for creating panels in a grid layout") (description diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index fe352f1b4e..ba1e78e745 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2100,7 +2100,7 @@ and fast file reading.") ;; Remove dataset with unclear license. (lambda _ (delete-file "vega_datasets/_data/la-riots.csv")))))) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-pandas)) (home-page "https://github.com/altair-viz/vega_datasets") (synopsis "Example datasets used by Vega-related projects") @@ -2133,6 +2133,7 @@ and Vega-Lite examples.") python-jsonschema python-numpy python-pandas + python-setuptools python-toolz python-typing-extensions)) (native-inputs (list python-black @@ -2166,7 +2167,8 @@ and Vega-Lite examples.") (lambda _ ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) - (propagated-inputs (list python-cython python-numpy)) + (propagated-inputs (list python-cython python-numpy python-setuptools + python-wheel)) (native-inputs (list python-nose)) (home-page "http://github.com/daleroberts/hdmedians") (synopsis "High-dimensional medians") @@ -2216,7 +2218,9 @@ machine learning, computer vision, and high-dimensional statistics.") python-scipy python-typing-extensions python-xarray - python-xarray-einstats)) + python-xarray-einstats + python-setuptools + python-wheel)) (home-page "https://github.com/arviz-devs/arviz") (synopsis "Exploratory analysis of Bayesian models") (description @@ -2481,7 +2485,9 @@ sampler for Markov chain Monte Carlo (MCMC).") python-pytest python-pytest-randomly python-pytest-xdist - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page (string-append "https://www.statsmodels.org/v" version "/")) (synopsis "Statistical modeling and econometrics in Python") diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index c227ff53dc..e6b69ff7f9 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -112,6 +112,7 @@ #:use-module (gnu packages popt) #:use-module (gnu packages protobuf) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-check) #:use-module (gnu packages python-xyz) #:use-module (gnu packages qt) @@ -252,8 +253,8 @@ managers.") (substitute* "tests/pty_test.py" (("python3") (search-input-file inputs "/bin/python3")))))))) (native-inputs - ;; For tests. - (list python-pytest)) + (list python-pytest ; For tests. + python-setuptools python-wheel)) (home-page "https://asciinema.org") (synopsis "Terminal session recorder") (description diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm index 2612201c11..4bec1d574c 100644 --- a/gnu/packages/time.scm +++ b/gnu/packages/time.scm @@ -283,6 +283,7 @@ datetime module, available in Python 2.3+.") "1wg3f3imjq3snvjccv64h5498pqv9xz664xhni7bsh8mnay91p83")))) (build-system pyproject-build-system) (propagated-inputs (list python-dateutil python-pytz)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/jmcantrell/python-dateutils") (synopsis "Various utilities for working with date and datetime objects") (description @@ -366,7 +367,7 @@ Python datetime objects.") ;; It's optional, remove this constrain where python-pytz is updated. #:test-flags #~(list "-k" "not test_with_pytz"))) (native-inputs - (list python-poetry-core python-pytest)) + (list python-poetry-core python-pytest python-setuptools)) (propagated-inputs (list python-cffi python-h3-3 python-numba python-numpy python-pytz)) (home-page "https://timezonefinder.michelfe.it/gui") diff --git a/gnu/packages/tor.scm b/gnu/packages/tor.scm index ab1483245f..0b3818e3cc 100644 --- a/gnu/packages/tor.scm +++ b/gnu/packages/tor.scm @@ -50,6 +50,7 @@ #:use-module (gnu packages glib) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-check) #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-web) @@ -447,7 +448,8 @@ Potential client and exit connections are scrubbed of sensitive information.") "1542g6alycwlmvndxcijzn4d5lgycmxxb78gqd8qwgm9kw0fnr3q")))) (build-system pyproject-build-system) (native-inputs - (list (list glib "bin"))) ; for glib-compile-schemas. + (list python-setuptools python-wheel + (list glib "bin"))) ; for glib-compile-schemas. (inputs (list python-fire python-psutil diff --git a/gnu/packages/tree-sitter.scm b/gnu/packages/tree-sitter.scm index eb72b415ee..9bca590bd9 100644 --- a/gnu/packages/tree-sitter.scm +++ b/gnu/packages/tree-sitter.scm @@ -32,6 +32,7 @@ #:use-module (gnu packages graphviz) #:use-module (gnu packages icu4c) #:use-module (gnu packages node) + #:use-module (gnu packages python-build) #:use-module (guix build-system cargo) #:use-module (guix build-system gnu) #:use-module (guix build-system pyproject) @@ -89,7 +90,8 @@ name))))))))) (inputs (list tree-sitter)) (native-inputs - (list tree-sitter-python tree-sitter-javascript)) + (list tree-sitter-python tree-sitter-javascript + python-setuptools python-wheel)) (home-page "https://github.com/tree-sitter/py-tree-sitter") (synopsis "Python bindings to the Tree-sitter parsing library") (description "This package provides Python bindings to the diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index 411ad4c2bf..dcd8cc302e 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -5761,7 +5761,7 @@ video from a Wayland session.") "1z9j3r9pm4rdynlmhgsgnwnnaqw5274yfy4kyillgd77msnpbhaw")))) (build-system pyproject-build-system) (native-inputs - (list gettext-minimal pkg-config)) + (list gettext-minimal pkg-config python-setuptools python-wheel)) (inputs (list python-pygobject gtk+ diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm index 1ab69b9572..c226b13066 100644 --- a/gnu/packages/vim.scm +++ b/gnu/packages/vim.scm @@ -72,6 +72,7 @@ #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-xyz) #:use-module (gnu packages ruby) #:use-module (gnu packages serialization) @@ -1025,7 +1026,8 @@ through its msgpack-rpc API.") (base32 "00kxlb3f1k7iaxzpsr07scavmnyg8c1jmicmr13mfk2lcdac6g2b")))) (build-system pyproject-build-system) - (propagated-inputs (list python-psutil python-pynvim)) + (propagated-inputs (list python-psutil python-pynvim python-setuptools)) + (native-inputs (list python-wheel)) (home-page "https://github.com/mhinz/neovim-remote") (synopsis "Control nvim processes using `nvr` commandline tool") (description "This package provide a `nvr` command, which can open File in |