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authorzimoun <zimon.toutoune@gmail.com>2019-07-24 20:22:02 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-07-24 23:05:39 +0200
commit1502751b3220feda44e34c07c617086538ac1296 (patch)
tree6f683e95fcbee68b83a66399b6561f2b85a4392d /gnu
parente0cb053edb34cd1cc74a5db1b6e59e6e16c2cfec (diff)
gnu: Add r-flowsom.
* gnu/packages/bioconductor.scm (r-flowsom): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ece5097940..ad48ccaebe 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4904,3 +4904,31 @@ with flow cytometry data.")
Cytometry data using non-parametric clustering and segmented-regression-based
change point detection.")
(license license:artistic2.0)))
+
+(define-public r-flowsom
+ (package
+ (name "r-flowsom")
+ (version "1.16.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "FlowSOM" version))
+ (sha256
+ (base32
+ "03wl3xk7g7vajc4kkrqa0gsbjfxlqr918qi849h5nir31963398l"))))
+ (properties `((upstream-name . "FlowSOM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-consensusclusterplus" ,r-consensusclusterplus)
+ ("r-flowcore" ,r-flowcore)
+ ("r-flowutils" ,r-flowutils)
+ ("r-igraph" ,r-igraph)
+ ("r-tsne" ,r-tsne)
+ ("r-xml" ,r-xml)))
+ (home-page "https://bioconductor.org/packages/FlowSOM/")
+ (synopsis "Visualize and interpret cytometry data")
+ (description
+ "FlowSOM offers visualization options for cytometry data, by using
+self-organizing map clustering and minimal spanning trees.")
+ (license license:gpl2+)))