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authorRicardo Wurmus <rekado@elephly.net>2018-03-19 10:45:40 +0100
committerRicardo Wurmus <rekado@elephly.net>2018-03-19 11:07:55 +0100
commit32b7ccf9b4c490613395d5f8ad06334c797e47e0 (patch)
tree00bb2675e9a952a5c19b6c739586954dcf07ba0a /gnu
parent2915221bcba0ee152b9d1910ec2462f2d5ebf8e7 (diff)
gnu: pigx-chipseq: Update to 0.0.8.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8. [inputs]: Add python-magic, python-xlrd, and trim-galore. [arguments]: Disable tests.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm10
1 files changed, 7 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 91f5d617eb..80f1437f22 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12737,7 +12737,7 @@ expression report comparing samples in an easily configurable manner.")
(define-public pigx-chipseq
(package
(name "pigx-chipseq")
- (version "0.0.2")
+ (version "0.0.8")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_chipseq/"
@@ -12745,10 +12745,11 @@ expression report comparing samples in an easily configurable manner.")
"/pigx_chipseq-" version ".tar.gz"))
(sha256
(base32
- "1jliwhifnjgl9x0z730bzpxswi2s84fyg5y8cagbyzpw509452f5"))))
+ "1plw0bz0b7flj0g9irbn8n520005lmajkiq5flpizzapsl0a0r9g"))))
(build-system gnu-build-system)
(arguments
- `(#:phases
+ `(#:tests? #f ; parts of the tests rely on access to the network
+ #:phases
(modify-phases %standard-phases
(add-after 'install 'wrap-executable
;; Make sure the executable finds all R modules.
@@ -12773,8 +12774,11 @@ expression report comparing samples in an easily configurable manner.")
("r-ggplot2" ,r-ggplot2)
("r-plotly" ,r-plotly)
("python-wrapper" ,python-wrapper)
+ ("python-magic" ,python-magic)
("python-pyyaml" ,python-pyyaml)
+ ("python-xlrd" ,python-xlrd)
("snakemake" ,snakemake)
+ ("trim-galore" ,trim-galore)
("macs" ,macs)
("multiqc" ,multiqc)
("perl" ,perl)