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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2018-07-04 17:45:08 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-07-05 15:08:44 +0200
commitf4235c0eca46a59c3a71e9977efcbed6248901cf (patch)
treed6ff48d7d5a95d62f9682f31b74e256f6d22949e /gnu
parent5da0e1428568be137054cb1fe220c28cd42f9eec (diff)
gnu: Add r-glimma.
* gnu/packages/bioconductor.scm (r-glimma): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm30
1 files changed, 29 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 40ac1d2015..611fd99336 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -28,7 +28,8 @@
#:use-module (gnu packages cran)
#:use-module (gnu packages compression)
#:use-module (gnu packages graph)
- #:use-module (gnu packages statistics))
+ #:use-module (gnu packages statistics)
+ #:use-module (gnu packages web))
(define-public r-bsgenome-dmelanogaster-ucsc-dm6
(package
@@ -750,3 +751,30 @@ trees and clusters to other programs.")
"This package provides tools to detect Gene Ontology and/or other user
defined categories which are over/under represented in RNA-seq data.")
(license license:lgpl2.0+)))
+
+(define-public r-glimma
+ (package
+ (name "r-glimma")
+ (version "1.8.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Glimma" version))
+ (sha256
+ (base32
+ "0kfia60vrlys6amdchdix01iwbkwyb7nfjqn5hczsxp8rhmbg25s"))))
+ (properties `((upstream-name . "Glimma")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-edger" ,r-edger)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://github.com/Shians/Glimma")
+ (synopsis "Interactive HTML graphics")
+ (description
+ "This package generates interactive visualisations for analysis of
+RNA-sequencing data using output from limma, edgeR or DESeq2 packages in an
+HTML page. The interactions are built on top of the popular static
+representations of analysis results in order to provide additional
+information.")
+ (license license:lgpl3)))