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authorRicardo Wurmus <rekado@elephly.net>2019-04-19 14:44:10 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-04-19 15:38:47 +0200
commit296da6e624633f4e049244e72647ceff535a6cc0 (patch)
tree4598ea7b6130c4d37c0343c59c4411da5c577fb7 /gnu
parent9b86fea05f223a3215e19cccc75d3504f707a1c2 (diff)
gnu: r-seurat: Update to 3.0.0.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0. [propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc, r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang, r-rsvd, r-scales, and r-sctransform.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm25
1 files changed, 10 insertions, 15 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index dc5d84653c..4cf6900498 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9438,40 +9438,33 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.")
(define-public r-seurat
(package
(name "r-seurat")
- (version "2.3.4")
+ (version "3.0.0")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
- "0l8bv4i9nzz26mirnva10mq6pimibj24vk7vpvfypgn7xk4942hd"))))
+ "183lm2wk0i3g114jbdf7pb4ssizr48qzqv3cknbsiackr8kvpsvc"))))
(properties `((upstream-name . "Seurat")))
(build-system r-build-system)
(propagated-inputs
`(("r-ape" ,r-ape)
("r-cluster" ,r-cluster)
("r-cowplot" ,r-cowplot)
- ("r-dosnow" ,r-dosnow)
- ("r-dplyr" ,r-dplyr)
- ("r-dtw" ,r-dtw)
("r-fitdistrplus" ,r-fitdistrplus)
- ("r-foreach" ,r-foreach)
- ("r-fpc" ,r-fpc)
+ ("r-future" ,r-future)
+ ("r-future-apply" ,r-future-apply)
("r-ggplot2" ,r-ggplot2)
+ ("r-ggrepel" ,r-ggrepel)
("r-ggridges" ,r-ggridges)
- ("r-gplots" ,r-gplots)
- ("r-hdf5r" ,r-hdf5r)
- ("r-hmisc" ,r-hmisc)
- ("r-httr" ,r-httr)
("r-ica" ,r-ica)
("r-igraph" ,r-igraph)
("r-irlba" ,r-irlba)
- ("r-lars" ,r-lars)
+ ("r-kernsmooth" ,r-kernsmooth)
("r-lmtest" ,r-lmtest)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
("r-metap" ,r-metap)
- ("r-mixtools" ,r-mixtools)
("r-pbapply" ,r-pbapply)
("r-plotly" ,r-plotly)
("r-png" ,r-png)
@@ -9480,12 +9473,14 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.")
("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen)
("r-rcppprogress" ,r-rcppprogress)
- ("r-reshape2" ,r-reshape2)
("r-reticulate" ,r-reticulate)
+ ("r-rlang" ,r-rlang)
("r-rocr" ,r-rocr)
+ ("r-rsvd" ,r-rsvd)
("r-rtsne" ,r-rtsne)
+ ("r-scales" ,r-scales)
+ ("r-sctransform" ,r-sctransform)
("r-sdmtools" ,r-sdmtools)
- ("r-tidyr" ,r-tidyr)
("r-tsne" ,r-tsne)))
(home-page "http://www.satijalab.org/seurat")
(synopsis "Seurat is an R toolkit for single cell genomics")