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authorRicardo Wurmus <rekado@elephly.net>2019-09-02 14:38:01 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-09-02 14:40:56 +0200
commit8e28535d0b0f92c04d50309c5d4a1189dc017a22 (patch)
treed7112a8f2bf6042b2f54517d6fb1211aa62b85c1 /gnu
parent8bcd6c953a7b3a1cb59189810a314794f7cc3bdf (diff)
gnu: Add r-leiden.
* gnu/packages/cran.scm (r-leiden): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/cran.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3470ad5c7d..f3566f28d2 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14995,6 +14995,32 @@ radius searches and @code{bd} as well as @code{kd} trees. The distance is
computed using the L1 (Manhattan, taxicab) metric.")
(license license:gpl3+)))
+(define-public r-leiden
+ (package
+ (name "r-leiden")
+ (version "0.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "leiden" version))
+ (sha256
+ (base32
+ "19gq27zin4gf4sh7h24gyq3f8jjir20n2l36a7pk1pbzcr4ixyhp"))))
+ (properties `((upstream-name . "leiden")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-igraph" ,r-igraph)
+ ("r-matrix" ,r-matrix)
+ ("r-reticulate" ,r-reticulate)))
+ (home-page "https://github.com/TomKellyGenetics/leiden")
+ (synopsis "R implementation of Leiden clustering algorithm")
+ (description
+ "This package implements the Python @code{leidenalg} module to be called
+in R. It enables clustering using the Leiden algorithm for partitioning a
+graph into communities. See also Traag et al (2018) \"From Louvain to Leiden:
+guaranteeing well-connected communities.\" <arXiv:1810.08473>.")
+ (license license:gpl3)))
+
(define-public r-patchwork
;; There has been no public release yet.
(let ((commit "fd7958bae3e7a1e30237c751952e412a0a1d1242")