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authorRicardo Wurmus <rekado@elephly.net>2020-06-22 14:34:35 +0200
committerRicardo Wurmus <rekado@elephly.net>2020-06-22 14:39:03 +0200
commitc89afe7516a45854d5b0975c24478c47e21fefd7 (patch)
tree0782642b2d11b60a8c6e8e59d1393dc1b22ce1d3 /gnu
parent277ac1f242084a7a5048cd07390c04cf277f80c3 (diff)
gnu: Add r-rgreat.
* gnu/packages/bioconductor.scm (r-rgreat): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index cfdd3d1c5e..002f4a0edb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8089,3 +8089,31 @@ metrics, such as the elbow method and Horn's parallel analysis, which has
relevance for data reduction in single-cell RNA-seq (scRNA-seq) and high
dimensional mass cytometry data.")
(license license:gpl3)))
+
+(define-public r-rgreat
+ (package
+ (name "r-rgreat")
+ (version "1.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "rGREAT" version))
+ (sha256
+ (base32
+ "0n8dw9ibb2klsczcxvvinpi9l53w8cs436i0c8w2jmramayl593v"))))
+ (properties `((upstream-name . "rGREAT")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomicranges" ,r-genomicranges)
+ ("r-getoptlong" ,r-getoptlong)
+ ("r-iranges" ,r-iranges)
+ ("r-rcurl" ,r-rcurl)
+ ("r-rjson" ,r-rjson)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/jokergoo/rGREAT")
+ (synopsis "Client for GREAT analysis")
+ (description
+ "This package makes GREAT (Genomic Regions Enrichment of Annotations
+Tool) analysis automatic by constructing a HTTP POST request according to
+user's input and automatically retrieving results from GREAT web server.")
+ (license license:expat)))