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authorPaul Garlick <pgarlick@tourbillion-technology.com>2018-09-03 11:57:38 +0100
committerLudovic Courtès <ludo@gnu.org>2018-09-04 15:22:48 +0200
commit71ca16b58d20aa26157acc4c345c0af80ec8df5d (patch)
tree8e37985e39de9fc692d2f3017417535e14668329 /gnu
parentb50658fe8ac898544a5c481f232a454c485524b9 (diff)
gnu: petsc-openmpi: Configure with support for hdf5 data format.
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hdf5-parallel-openmpi. [arguments]: Add '--with-hdf5-include' and '--with-hdf5-lib' flags. Add 'set-test-environment' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/maths.scm19
1 files changed, 17 insertions, 2 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 50c0a320e0..42136f65ea 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -15,7 +15,7 @@
;;; Copyright © 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be>
-;;; Copyright © 2017 Paul Garlick <pgarlick@tourbillion-technology.com>
+;;; Copyright © 2017, 2018 Paul Garlick <pgarlick@tourbillion-technology.com>
;;; Copyright © 2017 Nils Gillmann <ng0@n0.is>
;;; Copyright © 2017 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2017 Theodoros Foradis <theodoros@foradis.org>
@@ -1685,6 +1685,7 @@ scientific applications modeled by partial differential equations.")
(name "petsc-openmpi")
(inputs
`(("openmpi" ,openmpi)
+ ("hdf5" ,hdf5-parallel-openmpi)
,@(package-inputs petsc)))
(arguments
(substitute-keyword-arguments (package-arguments petsc)
@@ -1692,7 +1693,21 @@ scientific applications modeled by partial differential equations.")
``("--with-mpiexec=mpirun"
,(string-append "--with-mpi-dir="
(assoc-ref %build-inputs "openmpi"))
- ,@(delete "--with-mpi=0" ,cf)))))
+ ,(string-append "--with-hdf5-include="
+ (assoc-ref %build-inputs "hdf5") "/include")
+ ,(string-append "--with-hdf5-lib="
+ (assoc-ref %build-inputs "hdf5") "/lib/libhdf5.a")
+ ,@(delete "--with-mpi=0" ,cf)))
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (add-before 'check 'set-test-environment
+ (lambda _
+ ;; By default, running the test suite would fail because 'ssh'
+ ;; could not be found in $PATH. Define this variable to
+ ;; placate Open MPI without adding a dependency on OpenSSH (the
+ ;; agent isn't used anyway.)
+ (setenv "OMPI_MCA_plm_rsh_agent" (which "cat"))
+ #t))))))
(synopsis "Library to solve PDEs (with MPI support)")))
(define-public petsc-complex-openmpi