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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2017-08-30 17:12:23 +0200
committerRicardo Wurmus <rekado@elephly.net>2017-08-30 17:32:00 +0200
commit799247d2d97c2f4ae281b35e091f587988fb699a (patch)
tree24d98465a5fa63289775d611334390cbe2bed490 /gnu
parent4a7d2009c858391ec57ee571468b13fb3fdeab52 (diff)
gnu: multiqc: Update to 1.2.
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.2. [source]: Remove patches. [arguments]: Remove to enable tests. [propagated-inputs]: Add python-spectra, python-requests, python-markdown, python-lzstring. * gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/local.mk1
-rw-r--r--gnu/packages/bioinformatics.scm13
-rw-r--r--gnu/packages/patches/multiqc-fix-git-subprocess-error.patch16
3 files changed, 6 insertions, 24 deletions
diff --git a/gnu/local.mk b/gnu/local.mk
index 10d4ab1143..306a16911d 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -853,7 +853,6 @@ dist_patch_DATA = \
%D%/packages/patches/mozjs38-shell-version.patch \
%D%/packages/patches/mozjs38-tracelogger.patch \
%D%/packages/patches/mozjs38-version-detection.patch \
- %D%/packages/patches/multiqc-fix-git-subprocess-error.patch \
%D%/packages/patches/mumps-build-parallelism.patch \
%D%/packages/patches/mupdf-build-with-openjpeg-2.1.patch \
%D%/packages/patches/mupen64plus-ui-console-notice.patch \
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c5157046ab..d0df0ee41a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8575,25 +8575,24 @@ replacement for strverscmp.")
(define-public multiqc
(package
(name "multiqc")
- (version "0.9")
+ (version "1.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "multiqc" version))
(sha256
(base32
- "12gs1jw2jrxrij529rnl5kaqxfcqn15yzcsggxkfhdx634ml0cny"))
- (patches (search-patches "multiqc-fix-git-subprocess-error.patch"))))
+ "032svgym67k2ds7wp0cxzv79gi30yrdl45zbqn74lni3dk04qm33"))))
(build-system python-build-system)
- (arguments
- ;; Tests are to be introduced in the next version, see
- ;; https://github.com/ewels/MultiQC/issues/376
- `(#:tests? #f))
(propagated-inputs
`(("python-jinja2" ,python-jinja2)
("python-simplejson" ,python-simplejson)
("python-pyyaml" ,python-pyyaml)
("python-click" ,python-click)
+ ("python-spectra" ,python-spectra)
+ ("python-requests" ,python-requests)
+ ("python-markdown" ,python-markdown)
+ ("python-lzstring" ,python-lzstring)
("python-matplotlib" ,python-matplotlib)
("python-numpy" ,python-numpy)
;; MultQC checks for the presence of nose at runtime.
diff --git a/gnu/packages/patches/multiqc-fix-git-subprocess-error.patch b/gnu/packages/patches/multiqc-fix-git-subprocess-error.patch
deleted file mode 100644
index 87be6142f4..0000000000
--- a/gnu/packages/patches/multiqc-fix-git-subprocess-error.patch
+++ /dev/null
@@ -1,16 +0,0 @@
-Without this patch, the incorrect exception is caught when 'git' is not in
-PATH. See https://github.com/ewels/MultiQC/pull/377.
-
-diff --git a/multiqc/utils/config.py b/multiqc/utils/config.py
-index 01fa554..4a11793 100755
---- a/multiqc/utils/config.py
-+++ b/multiqc/utils/config.py
-@@ -28,7 +28,7 @@ try:
- git_hash = subprocess.check_output(['git', 'rev-parse', 'HEAD'], stderr=subprocess.STDOUT)
- git_hash_short = git_hash[:7]
- version = '{} ({})'.format(version, git_hash_short)
--except subprocess.CalledProcessError:
-+except (subprocess.CalledProcessError, FileNotFoundError):
- pass
- os.chdir(cwd)
-