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authorRicardo Wurmus <rekado@elephly.net>2016-09-28 22:28:51 +0200
committerRicardo Wurmus <rekado@elephly.net>2016-09-28 22:30:41 +0200
commit2320e76b8263eed4e753a7ae31c8b91b826ce2dc (patch)
tree5cafc9839e13354a5e27baee86aacb58fda633be /gnu
parent37042a0fb443199007daec20ad1a39decc7619e0 (diff)
gnu: sra-tools: Fix build on i686.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass "VDB_LIBDIR" in make-flags; dynamically link libmagic.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm12
1 files changed, 12 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ea76f8d00f..3cf1ffcd1f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4580,6 +4580,14 @@ sequence itself can be retrieved from these databases.")
(arguments
`(#:parallel-build? #f ; not supported
#:tests? #f ; no "check" target
+ #:make-flags
+ (list (string-append "VDB_LIBDIR="
+ (assoc-ref %build-inputs "ncbi-vdb")
+ ,(if (string-prefix? "x86_64"
+ (or (%current-target-system)
+ (%current-system)))
+ "/lib64"
+ "/lib32")))
#:phases
(alist-replace
'configure
@@ -4598,6 +4606,10 @@ sequence itself can be retrieved from these databases.")
(("my \\$ilibdir = File::Spec->catdir\\(\\$builddir, 'ilib'\\);")
"my $ilibdir = File::Spec->catdir($dir, 'ilib');"))
+ ;; Dynamic linking
+ (substitute* "tools/copycat/Makefile"
+ (("smagic-static") "lmagic"))
+
;; The 'configure' script doesn't recognize things like
;; '--enable-fast-install'.
(zero? (system*