diff options
| author | Efraim Flashner <efraim@flashner.co.il> | 2020-08-27 18:02:16 +0300 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2020-08-27 18:02:16 +0300 |
| commit | 35cb1bc527f2ad18db8620650a0d04b16b7eeca7 (patch) | |
| tree | 7e4e407d969775e9e4c77a6b6e4c6447f1a8cef7 /gnu | |
| parent | 3dd310087a883df6eb5ce47ca24fe8fbac15a2d7 (diff) | |
gnu: tabixpp: Build and install shared library and headers.
* gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Adjust custom
'build phase to build shared library. Adjust custom 'install phase to
install libraries and header.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 11 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a556354438..f7887b50d0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15400,12 +15400,19 @@ mutations from scRNA-Seq data.") (string-append "HTS_LIB=" htslib-ref "/lib/libhts.a") (string-append "INCLUDES= -I" htslib-ref "/include/htslib") "HTS_HEADERS=" ; No need to check for headers here. - (string-append "LIBPATH=-L. -L" htslib-ref "/include"))))) + (string-append "LIBPATH=-L. -L" htslib-ref "/include")) + (invoke "g++" "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts") + (invoke "ar" "rcs" "libtabixpp.a" "tabix.o")))) (replace 'install (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) - (install-file "tabix++" bin)) - #t))))) + (let* ((out (assoc-ref outputs "out")) + (lib (string-append out "/lib")) + (bin (string-append out "/bin"))) + (install-file "tabix++" bin) + (install-file "libtabixpp.so" lib) + (install-file "libtabixpp.a" lib) + (install-file "tabix.hpp" (string-append out "/include")) + #t)))))) (home-page "https://github.com/ekg/tabixpp") (synopsis "C++ wrapper around tabix project") (description "This is a C++ wrapper around the Tabix project which abstracts |