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authorRicardo Wurmus <rekado@elephly.net>2021-09-07 14:37:59 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-09-07 14:47:56 +0200
commit2794024dc276e6472137c33853bbef35eabac186 (patch)
tree27d492e0cefda42a45e0315fea48c1901e131426 /gnu
parent9cb08ead85182e074538ee65687eb727b7920dc7 (diff)
gnu: Add r-biomvrcns.
* gnu/packages/bioconductor.scm (r-biomvrcns): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 577727f336..b6e7c877ff 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14249,6 +14249,34 @@ design.")
design.")
(license license:lgpl2.1+)))
+(define-public r-biomvrcns
+ (package
+ (name "r-biomvrcns")
+ (version "1.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "biomvRCNS" version))
+ (sha256
+ (base32
+ "0wyzj422smr4m9mswzn9inc1sn86pnia7jmd6k28nd2a7fjyrm16"))))
+ (properties `((upstream-name . "biomvRCNS")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomicranges" ,r-genomicranges)
+ ("r-gviz" ,r-gviz)
+ ("r-iranges" ,r-iranges)
+ ("r-mvtnorm" ,r-mvtnorm)))
+ (home-page "https://bioconductor.org/packages/biomvRCNS")
+ (synopsis "Copy number study and segmentation for multivariate biological data")
+ (description
+ "In this package, a @dfn{Hidden Semi Markov Model} (HSMM) and one
+homogeneous segmentation model are designed and implemented for segmentation
+genomic data, with the aim of assisting in transcripts detection using high
+throughput technology like RNA-seq or tiling array, and copy number analysis
+using aCGH or sequencing.")
+ (license license:gpl2+)))
+
(define-public r-tximeta
(package
(name "r-tximeta")