diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2023-04-24 18:51:46 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-04-24 19:49:04 +0200 |
| commit | b8a0a10308458dbbb76ad68cf48c3580cf82eb94 (patch) | |
| tree | 85b088bbf502880dd958588942d6b8f54ebf9bb9 /gnu | |
| parent | 0bb60ed3ee9184dc635382ddb674071f5e5cc4d2 (diff) | |
gnu: Add htscodecs.
* gnu/packages/bioinformatics.scm (htscodecs): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 68c1406fc3..75e229a88a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5629,6 +5629,32 @@ FastQ files. This tool has multi-threading support to afford high performance.") (license license:expat))) +(define-public htscodecs + (package + (name "htscodecs") + (version "1.5.0") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/samtools/htscodecs/" + "releases/download/v" + version "/htscodecs-" version ".tar.gz")) + (sha256 + (base32 + "1cys6hp438m1rfmgq6xig3q0md7nh0m03jb17mc798q13lsggpil")))) + (build-system gnu-build-system) + (inputs (list bzip2 zlib)) + (home-page "https://github.com/samtools/htscodecs") + (synopsis "Custom compression for CRAM and others") + (description + "This package implements the custom CRAM codecs used for \"EXTERNAL\" +block types. These consist of two variants of the rANS codec (8-bit and +16-bit renormalisation, with run-length encoding and bit-packing also +supported in the latter), a dynamic arithmetic coder, and custom codecs for +name/ID compression and quality score compression derived from fqzcomp.") + (license + (list license:public-domain ;c_range_coder.h, rANS_byte.h, and rANS_word.h + license:bsd-3)))) ;all the rest + (define-public htslib (package (name "htslib") |