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-rw-r--r--gnu/packages/cran.scm34
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b6df127d2f..fc84b9fb54 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -40,6 +40,7 @@
#:use-module (guix build-system r)
#:use-module (gnu packages algebra)
#:use-module (gnu packages base)
+ #:use-module (gnu packages bioinformatics)
#:use-module (gnu packages compression)
#:use-module (gnu packages curl)
#:use-module (gnu packages databases)
@@ -11873,3 +11874,36 @@ extensions.")
"This package integrates sophisticated mixed modelling methods with a
whole genome approach to detecting significant QTL in linkage maps.")
(license license:gpl2+)))
+
+(define-public r-bedr
+ (package
+ (name "r-bedr")
+ (version "1.0.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "bedr" version))
+ (sha256
+ (base32
+ "0q790695h8bls0qw284n1zn7lxzym1dnnj095fsbjga2p116z4yv"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)
+ ("r-r-utils" ,r-r-utils)
+ ("r-testthat" ,r-testthat)
+ ("r-venndiagram" ,r-venndiagram)
+ ("r-yaml" ,r-yaml)
+ ("bedops" ,bedops)
+ ("bedtools" ,bedtools)
+ ("htslib" ,htslib))) ; for tabix
+ (native-inputs
+ `(("r-knitr" ,r-knitr))) ; for vignettes
+ (home-page "https://cran.r-project.org/web/packages/bedr")
+ (synopsis "Genomic region processing")
+ (description
+ "This package is for genomic regions processing using command line tools
+such as BEDTools, BEDOPS and Tabix. These tools offer scalable and efficient
+utilities to perform genome arithmetic e.g indexing, formatting and merging.
+The bedr package's API enhances access to these tools as well as offers
+additional utilities for genomic regions processing.")
+ (license license:gpl2)))