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-rw-r--r-- | gnu/packages/bioinformatics.scm | 67 |
1 files changed, 67 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 508f5ea09a..a47e84bc33 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -18796,6 +18796,73 @@ transcriptional derivatives and visualization of the resulting velocity patterns.") (license license:gpl3)))) +(define-public r-voltron + (let ((commit "5057b703479239a9aaba761f07e65d849f6111f8") + (revision "1")) + (package + (name "r-voltron") + (version (git-version "1.0.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BIMSBbioinfo/VoltRon") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1nximl4708a7fdwn8ysxpni3mp6dx33cphavlay7hh1pa55pnzgn")) + (modules '((guix build utils))) + ;; The tripack package is not available under a free license, + ;; but interp provides free implementations of "tri.mesh" and + ;; "neighbours". + (snippet + '(substitute* '("DESCRIPTION" "NAMESPACE" "R/spatial.R") + (("tripack") "interp"))))) + (properties `((upstream-name . "VoltRon"))) + (build-system r-build-system) + (inputs (list opencv tbb zlib)) + (propagated-inputs (list r-anndata + r-data-table + r-dplyr + r-ebimage + r-fastdummies + r-fnn + r-ggforce + r-ggplot2 + r-ggpubr + r-ggrepel + r-hdf5r + r-htmltools + r-igraph + r-interp + r-irlba + r-magick + r-matrix + r-morpho + r-raster + r-rcpp + r-reshape2 + r-rjson + r-rlang + r-s4vectors + r-scales + r-shiny + r-shinyjs + r-stringr + r-terra + r-umap + r-xml)) + (native-inputs (list pkg-config)) + (home-page "https://github.com/BIMSBbioinfo/VoltRon") + (synopsis "VoltRon for Spatial Data Integration and Analysis") + (description + "@code{VoltRon} is a toolbox for spatial data analysis, multi-omics +integration using spatial image registration. @code{VoltRon} is capable of +analyzing multiple types and modalities of spatially-aware datasets. +@code{VoltRon} visualizes and analyzes regions of interests (ROIs), spots, +cells and even molecules.") + (license license:expat)))) + (define-public methyldackel (package (name "methyldackel") |