diff options
| -rw-r--r-- | gnu/packages/bioconductor.scm | 37 |
1 files changed, 15 insertions, 22 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 79b94a9450..c60c51f34c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9837,18 +9837,16 @@ region sets and other genomic features.") (define-public r-reportingtools (package (name "r-reportingtools") - (version "2.39.0") + (version "2.42.3") (source (origin (method url-fetch) (uri (bioconductor-uri "ReportingTools" version)) (sha256 (base32 - "15h7vqdxfv7y0f82ff7a8brqnscs324x22izlkgjk2wqahnmr2l1")) + "109vmrdsjdjnfrlcdyadzbwz9a50hqaahf7dawwxkbbh4mmdih78")) (snippet - '(for-each delete-file - (list "inst/doc/jslib/jquery-1.8.0.min.js" - "inst/extdata/jslib/jquery-1.8.0.min.js"))))) + '(delete-file "inst/extdata/jslib/jquery-1.8.0.min.js")))) (properties `((upstream-name . "ReportingTools"))) (build-system r-build-system) @@ -9856,25 +9854,20 @@ region sets and other genomic features.") (list #:modules '((guix build utils) (guix build r-build-system) - (srfi srfi-1)) + (guix build minify-build-system) + (ice-9 match)) + #:imported-modules + `(,@%r-build-system-modules + (guix build minify-build-system)) #:phases - '(modify-phases %standard-phases + '(modify-phases (@ (guix build r-build-system) %standard-phases) (add-after 'unpack 'process-javascript (lambda* (#:key inputs #:allow-other-keys) - (call-with-values - (lambda () - (unzip2 - `((,(assoc-ref inputs "_") - "inst/doc/jslib/jquery-1.8.0.min.js")))) - (lambda (sources targets) - (for-each (lambda (source target) - (format #true "Processing ~a --> ~a~%" - source target) - (invoke "esbuild" source "--minify" - (string-append "--outfile=" target))) - sources targets))) - (copy-file "inst/doc/jslib/jquery-1.8.0.min.js" - "inst/extdata/jslib/jquery-1.8.0.min.js")))))) + (for-each (match-lambda + ((source . target) + (minify source #:target target))) + `((,(assoc-ref inputs "_") + . "inst/extdata/jslib/jquery-1.8.0.min.js")))))))) (propagated-inputs (list r-annotate r-annotationdbi @@ -9896,7 +9889,7 @@ region sets and other genomic features.") r-r-utils r-xml)) (native-inputs - (list esbuild r-knitr + (list esbuild r-rmarkdown (origin (method url-fetch) (uri "https://code.jquery.com/jquery-1.8.0.js") |