diff options
Diffstat (limited to 'gnu/packages/algebra.scm')
| -rw-r--r-- | gnu/packages/algebra.scm | 69 |
1 files changed, 38 insertions, 31 deletions
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index 34fb9ee4fd..4df2e96ecd 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -8,8 +8,10 @@ ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2017, 2019 Eric Bavier <bavier@member.fsf.org> +;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de> ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> +;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -406,7 +408,7 @@ precision.") ("gsl" ,gsl) ("lapack" ,lapack) ("libao" ,ao) - ("libjpeg" ,libjpeg) + ("libjpeg" ,libjpeg-turbo) ("libpng" ,libpng) ("libsamplerate" ,libsamplerate) ("libx11" ,libx11) @@ -689,15 +691,23 @@ binary.") (uri (string-append "mirror://gnu/bc/bc-" version ".tar.gz")) (sha256 (base32 - "0amh9ik44jfg66csyvf4zz1l878c4755kjndq9j0270akflgrbb2")))) + "0amh9ik44jfg66csyvf4zz1l878c4755kjndq9j0270akflgrbb2")) + (patches (search-patches "bc-fix-cross-compilation.patch")))) (build-system gnu-build-system) (native-inputs - `(("ed" ,ed) + `(("automake" ,automake) + ("autoconf" ,autoconf) + ("ed" ,ed) ("flex" ,flex) ("texinfo" ,texinfo))) (arguments '(#:configure-flags - (list "--with-readline"))) + (list "--with-readline") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'autogen + (lambda _ + (invoke "autoreconf" "-vif")))))) (home-page "https://www.gnu.org/software/bc/") (synopsis "Arbitrary precision numeric processing language") (description @@ -913,6 +923,29 @@ Fourier Transform} (DFT), @dfn{Discrete Cosine Transform} (DCT), @dfn{Discrete Sine Transform} (DST) and @dfn{Discrete Hartley Transform} (DHT).") (license license:bsd-2))) +(define-public lmfit + (package + (name "lmfit") + (version "8.2.2") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://jugit.fz-juelich.de/mlz/lmfit.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "00bch77a6qgnw6vzsjn2a42n8n683ih3xm0wpr454jxa15hw78vf")))) + (build-system cmake-build-system) + (native-inputs + `(("perl" ,perl))) ; for pod2man + (home-page "https://jugit.fz-juelich.de/mlz/lmfit") + (synopsis "Levenberg-Marquardt minimization and least-squares fitting") + (description "lmfit is a C library for Levenberg-Marquardt least-squares +minimization and curve fitting. It is mature code, based on decades-old +algorithms from the FORTRAN library MINPACK.") + (license license:bsd-2))) + (define-public eigen (package (name "eigen") @@ -1216,15 +1249,6 @@ objects.") ("libtool" ,libtool))) (propagated-inputs `(("gmp" ,gmp))) ; gmp++.h includes gmpxx.h - (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'bootstrap 'setenv - ;; Prevent the autogen.sh script to carry out the configure - ;; script, which has not yet been patched to replace /bin/sh. - (lambda _ - (setenv "NOCONFIGURE" "yes") - #t))))) (synopsis "Algebraic computations with exact rings and fields") (description "Givaro is a C++ library implementing the basic arithmetic of various @@ -1263,15 +1287,7 @@ compound objects, such as vectors, matrices and univariate polynomials.") `(#:configure-flags (list (string-append "--with-blas-libs=" (assoc-ref %build-inputs "openblas") - "/lib/libopenblas.so")) - #:phases - (modify-phases %standard-phases - (add-before 'bootstrap 'setenv - ;; Prevent the autogen.sh script to carry out the configure - ;; script, which has not yet been patched to replace /bin/sh. - (lambda _ - (setenv "NOCONFIGURE" "yes") - #t))))) + "/lib/libopenblas.so")))) (synopsis "C++ library for linear algebra over finite fields") (description "FFLAS-FFPACK is a C++ template library for basic linear algebra @@ -1307,15 +1323,6 @@ algebra, such as the row echelon form.") ("pkg-config" ,pkg-config))) (inputs `(("fflas-ffpack" ,fflas-ffpack))) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'bootstrap 'setenv - ;; Prevent the autogen.sh script to carry out the configure - ;; script, which has not yet been patched to replace /bin/sh. - (lambda _ - (setenv "NOCONFIGURE" "yes") - #t))))) (synopsis "C++ library for linear algebra over exact rings") (description "LinBox is a C++ template library for exact linear algebra computation |