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-rw-r--r--gnu/packages/astronomy.scm258
1 files changed, 222 insertions, 36 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e968fd2480..c209b1538f 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1,11 +1,11 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016 John Darrington <jmd@gnu.org>
;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2018, 2019, 2020, 2021, 2022 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2019 by Amar Singh <nly@disroot.org>
;;; Copyright © 2020 R Veera Kumar <vkor@vkten.in>
;;; Copyright © 2020, 2021 Guillaume Le Vaillant <glv@posteo.net>
-;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com>
+;;; Copyright © 2021, 2022 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2021, 2022 Vinicius Monego <monego@posteo.net>
;;; Copyright © 2021 Greg Hogan <code@greghogan.com>
;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com>
@@ -297,7 +297,7 @@ astronomical image-processing packages like Drizzle, Swarp or SExtractor.")
(define-public gnuastro
(package
(name "gnuastro")
- (version "0.16")
+ (version "0.17")
(source
(origin
(method url-fetch)
@@ -305,19 +305,19 @@ astronomical image-processing packages like Drizzle, Swarp or SExtractor.")
version ".tar.lz"))
(sha256
(base32
- "07xr0r5dmjpnrz7ylf7k3vmjjna2jafi16lfvkqwxj9fyssmz207"))))
+ "1gq37axs9l556pxxmnh47h088gbmp7sk3xjg59qzk2bsycg3dkgh"))))
(build-system gnu-build-system)
(arguments
'(#:configure-flags '("--disable-static")))
(inputs
- `(("cfitsio" ,cfitsio)
- ("curl" ,curl-minimal)
- ("gsl" ,gsl)
- ("libgit2" ,libgit2)
- ("libjpeg" ,libjpeg-turbo)
- ("libtiff" ,libtiff)
- ("wcslib" ,wcslib)
- ("zlib" ,zlib)))
+ (list cfitsio
+ curl-minimal
+ gsl
+ libgit2
+ libjpeg-turbo
+ libtiff
+ wcslib
+ zlib))
(native-inputs
(list libtool lzip))
(home-page "https://www.gnu.org/software/gnuastro/")
@@ -614,13 +614,13 @@ accurately in real time at any rate desired.")
(define-public python-astropy
(package
(name "python-astropy")
- (version "5.0")
+ (version "5.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy" version))
(sha256
- (base32 "09rr9z2kn5qw34fqpwxgcwsn9m5aw6f0dd0pm232aa8k3qakw83h"))
+ (base32 "09wh589ywjsgjvi76v2d2zqd9sri0461rrnml0b0pah5lbkcv0k3"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -826,21 +826,20 @@ of astronomical sources.")
(define-public python-pyvo
(package
(name "python-pyvo")
- (version "1.2")
+ (version "1.2.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyvo" version))
(sha256
- (base32 "1lap703wxbyxqlbk85myirp4pkdnc6cg10xhfajfsvz5k0hm5ffw"))))
+ (base32 "1ri5yp6903386lkn79mdcmlax7zsfrrrjbcvb91wxydcc9yasc1n"))))
(build-system python-build-system)
(arguments
- `(#:phases
+ '(#:phases
(modify-phases %standard-phases
(replace 'check
- (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (lambda* (#:key tests? #:allow-other-keys)
(when tests?
- (add-installed-pythonpath inputs outputs)
(invoke "python" "-m" "pytest" "--pyargs" "pyvo" "-k"
(string-append ; these tests use the network
"not test_access_with_string"
@@ -1460,34 +1459,221 @@ of stand-alone functions and classes.")
(define-public python-asdf
(package
(name "python-asdf")
- (version "2.7.4")
+ (version "2.8.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asdf" version))
(sha256
- (base32 "1mj52l2m8pbhiqacgjakjpvqi8kyx470yw151lcsswbq5wp0rsc6"))))
+ (base32 "0i4vq1hsympjgb1yvn4ql0gm8j1mki9ggmj03533kmg0nbzp03yy"))))
(build-system python-build-system)
(arguments
- ;; TODO: (Sharlatan-20210207T165820+0000): Tests depend on astropy, astropy
- ;; depends on asdf. Disable circular dependence.
+ ;; NOTE: (Sharlatan-20211229T201059+0000): Tests depend on astropy and
+ ;; gwcs, astropy gwcs depend on asdf. Disable circular dependence.
`(#:tests? #f))
(native-inputs
- `(("packaging" ,python-packaging)
- ("semantic-version" ,python-semantic-version)
- ("setuptools-scm" ,python-setuptools-scm)))
- (inputs
- `(("importlib-resources" ,python-importlib-resources)
- ("jsonschema" ,python-jsonschema)
- ("numpy" ,python-numpy)
- ("pyyaml" ,python-pyyaml)))
- (home-page "https://github.com/asdf-format/asdf")
- (synopsis "Python tools to handle ASDF files")
- (description
- "The Advanced Scientific Data Format (ASDF) is a next-generation
+ (list python-setuptools-scm
+ python-semantic-version
+ python-packaging))
+ (propagated-inputs
+ (list python-importlib-resources
+ python-jsonschema
+ python-jmespath
+ python-numpy
+ python-pyyaml))
+ (home-page "https://github.com/asdf-format/asdf")
+ (synopsis "Python tools to handle ASDF files")
+ (description
+ "The Advanced Scientific Data Format (ASDF) is a next-generation
interchange format for scientific data. This package contains the Python
implementation of the ASDF Standard.")
- (license license:bsd-3)))
+ (license license:bsd-3)))
+
+(define python-asdf-transform-schemas
+ (package
+ (name "python-asdf-transform-schemas")
+ (version "0.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "asdf_transform_schemas" version))
+ (sha256
+ (base32 "1gmzd81hw4ppsvzrc91wcbjpcw9hhv9gavllv7nyi7qjb54c837g"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest")))))))
+ (native-inputs
+ (list python-pytest
+ python-semantic-version
+ python-setuptools-scm))
+ (propagated-inputs
+ (list python-asdf))
+ (home-page "https://github.com/asdf-format/asdf-transform-schemas")
+ (synopsis "ASDF schemas for transforms")
+ (description
+ "This package provides ASDF schemas for validating transform tags. Users
+should not need to install this directly; instead, install an implementation
+package such as asdf-astropy.")
+ (license license:bsd-3)))
+
+(define python-asdf-coordinates-schemas
+ (package
+ (name "python-asdf-coordinates-schemas")
+ (version "0.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "asdf_coordinates_schemas" version))
+ (sha256
+ (base32 "0ahwhsz5jzljnpkfd2kvspirg823lnj5ip9sfkd9cx09z1nlz8jg"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest")))))))
+ (native-inputs
+ (list python-pytest
+ python-semantic-version
+ python-setuptools-scm))
+ (propagated-inputs
+ (list python-asdf))
+ (home-page "https://github.com/asdf-format/asdf-coordinates-schemas")
+ (synopsis "ASDF coordinates schemas")
+ (description "This package provides ASDF schemas for validating
+coordinates tags. Users should not need to install this directly; instead,
+install an implementation package such as asdf-astropy.")
+ (license license:bsd-3)))
+
+(define-public python-asdf-astropy
+ (package
+ (name "python-asdf-astropy")
+ (version "0.1.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "asdf_astropy" version))
+ (sha256
+ (base32 "0bzgah7gskvnz6jcrzipvzixv8k2jzjkskqwxngzwp4nxgjbcvi4"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest")))))))
+ (native-inputs
+ (list python-coverage
+ python-h5py
+ python-matplotlib
+ python-pandas
+ python-pytest-astropy
+ python-scipy
+ python-semantic-version
+ python-setuptools-scm))
+ (propagated-inputs
+ (list python-asdf
+ python-asdf-coordinates-schemas
+ python-asdf-transform-schemas
+ python-astropy
+ python-numpy
+ python-packaging))
+ (home-page "https://github.com/astropy/asdf-astropy")
+ (synopsis "ASDF serialization support for astropy")
+ (description
+ "This package includes plugins that provide ASDF serialization support for
+Astropy objects.")
+ (license license:bsd-3)))
+
+(define python-asdf-wcs-schemas
+ (package
+ (name "python-asdf-wcs-schemas")
+ (version "0.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "asdf_wcs_schemas" version))
+ (sha256
+ (base32 "0khyab9mnf2lv755as8kwhk3lqqpd3f4291ny3b9yp3ik86fzhz1"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest")))))))
+ (native-inputs
+ (list python-pytest
+ python-setuptools-scm
+ python-semantic-version))
+ (propagated-inputs
+ (list python-asdf))
+ (home-page "https://github.com/asdf-format/asdf-wcs-schemas")
+ (synopsis "ASDF WCS Schemas")
+ (description
+ "This package provides ASDF schemas for validating World Coordinate
+System (WCS) tags. Users should not need to install this directly; instead,
+install an implementation package such as gwcs.")
+ (license license:bsd-3)))
+
+(define-public python-gwcs
+ (package
+ (name "python-gwcs")
+ (version "0.18.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "gwcs" version))
+ (sha256
+ (base32 "194j49m8xjjzv9pp8cnj06igz8sdxb0nphyybcc7mhigw0f0kr30"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest")))))))
+ (native-inputs
+ (list python-jsonschema
+ python-jmespath
+ python-pytest
+ python-pytest-doctestplus
+ python-pyyaml
+ python-semantic-version
+ python-setuptools-scm))
+ (propagated-inputs
+ (list python-asdf
+ python-asdf-astropy
+ python-asdf-wcs-schemas
+ python-astropy
+ python-numpy
+ python-scipy))
+ (home-page "https://gwcs.readthedocs.io/en/latest/")
+ (synopsis "Generalized World Coordinate System")
+ (description "Generalized World Coordinate System (GWCS) is an Astropy
+affiliated package providing tools for managing the World Coordinate System of
+astronomical data.
+
+GWCS takes a general approach to the problem of expressing transformations
+between pixel and world coordinates. It supports a data model which includes
+the entire transformation pipeline from input coordinates (detector by
+default) to world coordinates.")
+ (license license:bsd-3)))
(define-public python-astroalign
(package
generated by cgit v1.2.3 (git 2.45.2) at 2024-07-11 15:17:44 +0000