diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r-- | gnu/packages/bioconductor.scm | 46 |
1 files changed, 23 insertions, 23 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0beef9ace4..0fca094977 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3549,13 +3549,13 @@ paired or unpaired study designs.") (define-public r-alevinqc (package (name "r-alevinqc") - (version "1.18.0") + (version "1.18.1") (source (origin (method url-fetch) (uri (bioconductor-uri "alevinQC" version)) (sha256 (base32 - "0lhbh9xgkbrad9fqvxl4c6y0f2kgibn6sinp8znysk5m9z0ngpwp")))) + "0jzvldbqsqz5j0fp41jdq3vfwp1q1ggckparzx21jlli211c9shr")))) (properties `((upstream-name . "alevinQC"))) (build-system r-build-system) (propagated-inputs @@ -4529,13 +4529,13 @@ Various visual and textual types of output are available.") (define-public r-bambu (package (name "r-bambu") - (version "3.4.0") + (version "3.4.1") (source (origin (method url-fetch) (uri (bioconductor-uri "bambu" version)) (sha256 (base32 - "02pcab8jfwlx4y00yky63anba61bb1h884m0f6ajvasfpgl30w6i")))) + "0j2ivn93dpn7xas0bzfxhwmqzxzscgc3sjkx85y5v2ra1i6jy5k7")))) (properties `((upstream-name . "bambu"))) (build-system r-build-system) (propagated-inputs @@ -6646,14 +6646,14 @@ databases. Packages produced are intended to be used with AnnotationDbi.") (define-public r-annotationhub (package (name "r-annotationhub") - (version "3.10.0") + (version "3.10.1") (source (origin (method url-fetch) (uri (bioconductor-uri "AnnotationHub" version)) (sha256 (base32 - "1mx3vip1rx5lq0vnkxpmkyksnq4vygmww85vxq3spr0fah1pwnkr")))) + "12vc573gmg8bwcfa268yq7npg7mivhngx4lx16nzan56rqb475yx")))) (properties `((upstream-name . "AnnotationHub"))) (build-system r-build-system) (propagated-inputs @@ -8221,13 +8221,13 @@ Enrichment Analysis} (GSEA).") (define-public r-gsva (package (name "r-gsva") - (version "1.50.1") + (version "1.50.5") (source (origin (method url-fetch) (uri (bioconductor-uri "GSVA" version)) (sha256 (base32 - "0ld0bbl6ar3yhi6ncg9d8q60hg4m4v5kphl044fw63l19ixln7cf")))) + "0n1g376jfpmnlsjdbv23hb3jny03i84jmvhrcpz2rb5bbpfbm0al")))) (properties `((upstream-name . "GSVA"))) (build-system r-build-system) (propagated-inputs (list r-biobase @@ -10952,13 +10952,13 @@ single-cell RNA-seq.") (define-public r-seqarray (package (name "r-seqarray") - (version "1.42.3") + (version "1.42.4") (source (origin (method url-fetch) (uri (bioconductor-uri "SeqArray" version)) (sha256 (base32 - "1500vwsgdxdaafp2fb0252c0hhpz3lhrniv21nb7xnky7mbr7lk6")))) + "0k7g4wkj1l35pjy6gb3bdlmz5g8q2d596glj09ggm73aaj3z4m9d")))) (properties `((upstream-name . "SeqArray"))) (build-system r-build-system) (propagated-inputs (list r-biostrings @@ -12023,14 +12023,14 @@ of gene-level counts.") (define-public r-valr (package (name "r-valr") - (version "0.7.0") + (version "0.8.0") (source (origin (method url-fetch) (uri (cran-uri "valr" version)) (sha256 (base32 - "038s5n8cbffpb9132rpw7q82cxfzlsc86fcywhv63c8szm5g9nrk")))) + "0jf47yfi8dr8mgqv1gbl2kd7wgyiwsnipiwfdhf9l346yg9aj96l")))) (build-system r-build-system) (propagated-inputs (list r-broom @@ -13006,18 +13006,19 @@ signals directly in the Bruker format.") (define-public r-codedepends (package (name "r-codedepends") - (version "0.6.5") + (version "0.6.6") (source (origin (method url-fetch) (uri (cran-uri "CodeDepends" version)) (sha256 (base32 - "0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq")))) + "0msq5ksjqp2pjzl6f1vizw53gdf5lz520bpdr5dbjwz5mc1mp0bz")))) (properties `((upstream-name . "CodeDepends"))) (build-system r-build-system) (propagated-inputs (list r-codetools r-graph r-xml)) + (native-inputs (list r-knitr)) (home-page "https://cran.r-project.org/web/packages/CodeDepends") (synopsis "Analysis of R code for reproducible research and code comprehension") (description @@ -13202,14 +13203,14 @@ respectively.") (define-public r-bayseq (package (name "r-bayseq") - (version "2.36.0") + (version "2.36.2") (source (origin (method url-fetch) (uri (bioconductor-uri "baySeq" version)) (sha256 (base32 - "1b5vvzl0kkm6kb03vr6m6sdlr3azpc24933a7ayxkiffmf2wbi0g")))) + "0c24glflznbihx81kgvlx5i3wb95c7jg4wllwawry4kb6rkjbwp0")))) (properties `((upstream-name . "baySeq"))) (build-system r-build-system) (propagated-inputs @@ -14493,14 +14494,14 @@ single cell assay data.") (define-public r-monocle (package (name "r-monocle") - (version "2.30.0") + (version "2.30.1") (source (origin (method url-fetch) (uri (bioconductor-uri "monocle" version)) (sha256 (base32 - "0i1qnmiaf3gf8955nlqzd81xzg4siliq154k699jmsz0fyyykia1")))) + "0hb2s58xx5cmrn3wlppay7275mln8r5y5dsnvpcps3s6xcab00rm")))) (build-system r-build-system) (propagated-inputs (list r-biobase @@ -14523,7 +14524,6 @@ single cell assay data.") r-pheatmap r-plyr r-proxy - r-qlcmatrix r-rann r-rcpp r-reshape2 @@ -15455,14 +15455,14 @@ are standardized and usable by the accompanying mutossGUI package.") (define-public r-metap (package (name "r-metap") - (version "1.9") + (version "1.10") (source (origin (method url-fetch) (uri (cran-uri "metap" version)) (sha256 (base32 - "1w4mv7vb94d4pkllvabz9az8sbrbfhigxw4is3j0jzi1pnlyc8kg")))) + "18l86026g5g0pdihw41h7yck1ad5k43bb7as5qih2k5xkr680mzx")))) (build-system r-build-system) (propagated-inputs (list r-lattice @@ -20752,14 +20752,14 @@ rownames.") (define-public r-bioconcotk (package (name "r-bioconcotk") - (version "1.22.0") + (version "1.22.2") (source (origin (method url-fetch) (uri (bioconductor-uri "BiocOncoTK" version)) (sha256 (base32 - "1xymgfiv9abyaq5s7m683ml8a1ls9mqvbh9qjiz3jqbbpvmsm502")))) + "0yx32yj9bw78nhbv1yvgs26sxdmnava1a89g9hs4ai26c1hy150s")))) (properties `((upstream-name . "BiocOncoTK"))) (build-system r-build-system) (propagated-inputs |