summaryrefslogtreecommitdiff
path: root/gnu/packages/bioconductor.scm
diff options
context:
space:
mode:
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm21
1 files changed, 14 insertions, 7 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0d4110bc20..bb319a13e5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2287,33 +2287,40 @@ analysis, modelling, and visualization of spike-in controls.")
(define-public r-ancombc
(package
(name "r-ancombc")
- (version "1.6.1")
+ (version "2.0.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "ANCOMBC" version))
(sha256
(base32
- "1p9yryv85qk7m3hbflmpdffd3azpsifcw54x1rp8sb67yjmq3whq"))))
+ "1bwzvi6j3s66dcll1lb4xy25j4nfn1ln6mc3flh0wgy13l26x8m6"))))
(properties `((upstream-name . "ANCOMBC")))
(build-system r-build-system)
(propagated-inputs
- (list r-desctools
+ (list r-cvxr
+ r-desctools
r-doparallel
r-dorng
r-dplyr
+ r-emmeans
r-energy
r-foreach
r-hmisc
+ r-lme4
+ r-lmertest
r-magrittr
r-mass
- r-microbiome
- r-nlme
+ r-mia
r-nloptr
- r-phyloseq
r-rdpack
r-rlang
+ r-rngtools
+ r-s4vectors
+ r-singlecellexperiment
+ r-summarizedexperiment
r-tibble
- r-tidyr))
+ r-tidyr
+ r-treesummarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/FrederickHuangLin/ANCOMBC")
(synopsis "Analysis of compositions of microbiomes with bias correction")