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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 064882b2d9..292449a7e4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12390,6 +12390,44 @@ Needleman-Wunsch).") ;; Dual licensed; also includes public domain source. (license (list license:gpl3 license:bsd-2)))) +(define-public pairadise + (package + (name "pairadise") + (version "1.0.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Xinglab/PAIRADISE") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0ycwcqabm4zdng0a7j593g35d5yzvvwm7dyi3b8s19zdi4rjzrwd")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'chdir + (lambda _ (chdir "pairadise"))) + (add-before 'build '2to3 + (lambda _ (invoke "2to3" "--write" "--nobackups" ".")))))) + (inputs (list star)) + (propagated-inputs (list python-pysam)) + (home-page "https://github.com/Xinglab/PAIRADISE") + (synopsis "Paired replicate analysis of allelic differential splicing events") + (description + "PAIRADISE is a method for detecting @dfn{allele-specific alternative +splicing} (ASAS) from RNA-seq data. Unlike conventional approaches that +detect ASAS events one sample at a time, PAIRADISE aggregates ASAS signals +across multiple individuals in a population. By treating the two alleles of +an individual as paired, and multiple individuals sharing a heterozygous SNP +as replicates, PAIRADISE formulates ASAS detection as a statistical problem +for identifying differential alternative splicing from RNA-seq data with +paired replicates.") + (license license:gpl3+))) + (define-public pardre (package (name "pardre") |