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-rw-r--r--gnu/packages/bioinformatics.scm232
1 files changed, 116 insertions, 116 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7e97cdea7c..56837844b0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -189,7 +189,7 @@ structure of the predicted RNA.")
(method git-fetch)
;; BamM is not available on pypi.
(uri (git-reference
- (url "https://github.com/Ecogenomics/BamM.git")
+ (url "https://github.com/Ecogenomics/BamM")
(commit version)
(recursive? #t)))
(file-name (git-file-name name version))
@@ -283,7 +283,7 @@ instance, it implements several methods to assess contig-wise read coverage.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/pezmaster31/bamtools.git")
+ (url "https://github.com/pezmaster31/bamtools")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -361,7 +361,7 @@ transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/bedops/bedops.git")
+ (url "https://github.com/bedops/bedops")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -484,7 +484,7 @@ BED, GFF/GTF, VCF.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/PacificBiosciences/pbbam.git")
+ (url "https://github.com/PacificBiosciences/pbbam")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -540,7 +540,7 @@ Non-PacBio BAMs will cause exceptions to be thrown.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/PacificBiosciences/blasr_libcpp.git")
+ (url "https://github.com/PacificBiosciences/blasr_libcpp")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -602,7 +602,7 @@ hdf and alignment.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/PacificBiosciences/blasr.git")
+ (url "https://github.com/PacificBiosciences/blasr")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -693,7 +693,7 @@ provides the Ribotaper pipeline.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/ratschlab/RiboDiff.git")
+ (url "https://github.com/ratschlab/RiboDiff")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -737,7 +737,7 @@ independently with transcriptional regulation.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/lh3/bioawk.git")
+ (url "https://github.com/lh3/bioawk")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -900,7 +900,7 @@ Python.")
;; Use GitHub as source because PyPI distribution does not contain
;; test data: https://github.com/biocore/biom-format/issues/693
(uri (git-reference
- (url "https://github.com/biocore/biom-format.git")
+ (url "https://github.com/biocore/biom-format")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -1567,7 +1567,7 @@ errors at the end of reads.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/BenLangmead/bowtie2.git")
+ (url "https://github.com/BenLangmead/bowtie2")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -1783,7 +1783,7 @@ and more accurate. BWA-MEM also has better performance than BWA-backtrack for
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/pkerpedjiev/bwa-pssm.git")
+ (url "https://github.com/pkerpedjiev/bwa-pssm")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -1813,7 +1813,7 @@ well as many of the command line options.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/brentp/bwa-meth.git")
+ (url "https://github.com/brentp/bwa-meth")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -1887,7 +1887,7 @@ multiple sequence alignments.")
(method git-fetch)
;; Test data is missing on PyPi.
(uri (git-reference
- (url "https://github.com/pysam-developers/pysam.git")
+ (url "https://github.com/pysam-developers/pysam")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -2036,7 +2036,7 @@ high-throughput sequencing data – with an emphasis on simplicity.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/mhammell-laboratory/tetoolkit.git")
+ (url "https://github.com/mhammell-laboratory/tetoolkit")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -2153,7 +2153,7 @@ databases.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/YeoLab/clipper.git")
+ (url "https://github.com/YeoLab/clipper")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -2412,7 +2412,7 @@ interval trees with associated meta-data. It is primarily used by the
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/deeptools/deepTools.git")
+ (url "https://github.com/deeptools/deepTools")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -2480,7 +2480,7 @@ other types of unwanted sequence from high-throughput sequencing reads.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/dpryan79/libBigWig.git")
+ (url "https://github.com/dpryan79/libBigWig")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -2560,7 +2560,7 @@ accessing bigWig files.")
(method git-fetch)
;; Source from GitHub so that tests are included.
(uri (git-reference
- (url "https://github.com/jeetsukumaran/DendroPy.git")
+ (url "https://github.com/jeetsukumaran/DendroPy")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -2618,7 +2618,7 @@ with Python.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/dellytools/delly.git")
+ (url "https://github.com/dellytools/delly")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -2665,7 +2665,7 @@ accurately delineate genomic rearrangements throughout the genome.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/bbuchfink/diamond.git")
+ (url "https://github.com/bbuchfink/diamond")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -2700,7 +2700,7 @@ data and settings.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/maaskola/discrover.git")
+ (url "https://github.com/maaskola/discrover")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -2773,7 +2773,7 @@ of nucleic acid binding proteins.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/DReichLab/EIG.git")
+ (url "https://github.com/DReichLab/EIG")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -3021,7 +3021,7 @@ dynamic programming or a variety of heuristics.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/adarob/eXpress.git")
+ (url "https://github.com/adarob/eXpress")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -3072,7 +3072,7 @@ ChIP-Seq, and analysis of metagenomic data.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/dparks1134/ExpressBetaDiversity.git")
+ (url "https://github.com/dparks1134/ExpressBetaDiversity")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -3199,7 +3199,7 @@ results. The FASTX-Toolkit tools perform some of these preprocessing tasks.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/seqan/flexbar.git")
+ (url "https://github.com/seqan/flexbar")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -3342,7 +3342,7 @@ genes in incomplete assemblies or complete genomes.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/ctSkennerton/fxtract.git")
+ (url "https://github.com/ctSkennerton/fxtract")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -3378,7 +3378,7 @@ genes in incomplete assemblies or complete genomes.")
,(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/ctSkennerton/util.git")
+ (url "https://github.com/ctSkennerton/util")
(commit util-commit)))
(file-name (string-append
"ctstennerton-util-" util-commit "-checkout"))
@@ -3405,7 +3405,7 @@ comment or quality sections.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/xiangzhou/GEMMA.git")
+ (url "https://github.com/xiangzhou/GEMMA")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -3465,7 +3465,7 @@ association studies (GWAS).")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/nboley/grit.git")
+ (url "https://github.com/nboley/grit")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -3690,7 +3690,7 @@ from high-throughput sequencing assays.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/samtools/htsjdk.git")
+ (url "https://github.com/samtools/htsjdk")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -3740,7 +3740,7 @@ manipulating HTS data.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/samtools/htsjdk.git")
+ (url "https://github.com/samtools/htsjdk")
(commit version)))
(file-name (string-append name "-" version "-checkout"))
(sha256
@@ -3784,7 +3784,7 @@ manipulating HTS data.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/samtools/htsjdk.git")
+ (url "https://github.com/samtools/htsjdk")
(commit version)))
(file-name (string-append name "-" version "-checkout"))
(sha256
@@ -3812,7 +3812,7 @@ manipulating HTS data.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/broadinstitute/picard.git")
+ (url "https://github.com/broadinstitute/picard")
(commit version)))
(file-name (string-append "java-picard-" version "-checkout"))
(sha256
@@ -3891,7 +3891,7 @@ VCF.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/broadinstitute/picard.git")
+ (url "https://github.com/broadinstitute/picard")
(commit version)))
(file-name (string-append "java-picard-" version "-checkout"))
(sha256
@@ -3981,7 +3981,7 @@ VCF.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/broadinstitute/picard.git")
+ (url "https://github.com/broadinstitute/picard")
(commit version)))
(file-name (string-append "java-picard-" version "-checkout"))
(sha256
@@ -4178,7 +4178,7 @@ The main functions of FastQC are:
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/OpenGene/fastp.git")
+ (url "https://github.com/OpenGene/fastp")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -4258,7 +4258,7 @@ data. It also provides the @command{bgzip}, @command{htsfile}, and
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/nboley/idr.git")
+ (url "https://github.com/nboley/idr")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -4349,7 +4349,7 @@ command, or queried for specific k-mers with @code{jellyfish query}.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/dib-lab/khmer.git")
+ (url "https://github.com/dib-lab/khmer")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -4457,7 +4457,7 @@ experiments.")
;; The PyPi tarball does not contain tests.
(method git-fetch)
(uri (git-reference
- (url "https://github.com/taoliu/MACS.git")
+ (url "https://github.com/taoliu/MACS")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -4580,7 +4580,7 @@ sequences).")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/marbl/mash.git")
+ (url "https://github.com/marbl/mash")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -4719,7 +4719,7 @@ probabilistic distances of genome abundance and tetranucleotide frequency.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/ctSkennerton/minced.git")
+ (url "https://github.com/ctSkennerton/minced")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -4861,7 +4861,7 @@ program for nucleotide and protein sequences.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/tjunier/newick_utils.git")
+ (url "https://github.com/tjunier/newick_utils")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
@@ -4999,7 +4999,7 @@ the phenotype as it models the data.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/PacificBiosciences/cDNA_primer.git")
+ (url "https://github.com/PacificBiosciences/cDNA_primer")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
@@ -5220,7 +5220,7 @@ different command-line tools:
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/hyattpd/Prodigal.git")
+ (url "https://github.com/hyattpd/Prodigal")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -5369,7 +5369,7 @@ extremely diverse sets of genomes.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/stamatak/standard-RAxML.git")
+ (url "https://github.com/stamatak/standard-RAxML")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -5410,7 +5410,7 @@ phylogenies.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/deweylab/RSEM.git")
+ (url "https://github.com/deweylab/RSEM")
(commit (string-append "v" version))))
(sha256
(base32 "1jlq11d1p8qp64w75yj8cnbbd1a93viq10pzsbwal7vdn8fg13j1"))
@@ -5699,7 +5699,7 @@ viewer.")
;; There are no release tarballs nor tags.
(method git-fetch)
(uri (git-reference
- (url "https://github.com/wanpinglee/MOSAIK.git")
+ (url "https://github.com/wanpinglee/MOSAIK")
(commit commit)))
(file-name (string-append name "-" version))
(sha256
@@ -5745,7 +5745,7 @@ Roche 454, Ion Torrent and Pacific BioSciences SMRT.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/ncbi/ngs.git")
+ (url "https://github.com/ncbi/ngs")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -5811,7 +5811,7 @@ simultaneously.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/ncbi/ncbi-vdb.git")
+ (url "https://github.com/ncbi/ncbi-vdb")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -5983,7 +5983,7 @@ subsequent visualization, annotation and storage of results.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/chrchang/plink-ng.git")
+ (url "https://github.com/chrchang/plink-ng")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -6022,7 +6022,7 @@ subsequent visualization, annotation and storage of results.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/smithlabcode/smithlab_cpp.git")
+ (url "https://github.com/smithlabcode/smithlab_cpp")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
@@ -6171,7 +6171,7 @@ sequence itself can be retrieved from these databases.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/ncbi/sra-tools.git")
+ (url "https://github.com/ncbi/sra-tools")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -6381,7 +6381,7 @@ is one that takes arguments.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/lh3/seqtk.git")
+ (url "https://github.com/lh3/seqtk")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -6417,7 +6417,7 @@ optionally compressed by gzip.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/amplab/snap.git")
+ (url "https://github.com/amplab/snap")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -6459,7 +6459,7 @@ of these reads to align data quickly through a hash-based indexing scheme.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/biocore/sortmerna.git")
+ (url "https://github.com/biocore/sortmerna")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -6505,7 +6505,7 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/alexdobin/STAR.git")
+ (url "https://github.com/alexdobin/STAR")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -6733,7 +6733,7 @@ Cuffdiff or Ballgown programs.")
;; The Pypi version does not include tests.
(method git-fetch)
(uri (git-reference
- (url "https://github.com/fhcrc/taxtastic.git")
+ (url "https://github.com/fhcrc/taxtastic")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -6858,7 +6858,7 @@ sequence.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/hms-dbmi/scde.git")
+ (url "https://github.com/hms-dbmi/scde")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -7304,7 +7304,7 @@ annotation infrastructure.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/torognes/vsearch.git")
+ (url "https://github.com/torognes/vsearch")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@@ -8809,7 +8809,7 @@ in SNV base substitution data.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/ManuSetty/ChIPKernels.git")
+ (url "https://github.com/ManuSetty/ChIPKernels")
(commit commit)))
(file-name (string-append name "-" version))
(sha256
@@ -8843,7 +8843,7 @@ Sequences.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/ManuSetty/SeqGL.git")
+ (url "https://github.com/ManuSetty/SeqGL")
(commit version)))
(file-name (git-file-name name version))
(sha256
@@ -9019,7 +9019,7 @@ tools for sequence analysis into a seamless whole.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/arq5x/bits.git")
+ (url "https://github.com/arq5x/bits")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
@@ -9065,7 +9065,7 @@ intervals (e.g. genes, sequence alignments).")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/smithlabcode/piranha.git")
+ (url "https://github.com/smithlabcode/piranha")
(commit commit)))
(file-name (git-file-name name version))
(sha256
@@ -9104,7 +9104,7 @@ intervals (e.g. genes, sequence alignments).")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/smithlabcode/smithlab_cpp.git")
+ (url "https://github.com/smithlabcode/smithlab_cpp")
(commit commit)))
(file-name (string-append "smithlab_cpp-" commit "-checkout"))
(sha256
@@ -9157,7 +9157,7 @@ group or two ChIP groups run under different conditions.")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/ekg/filevercmp.git")
+ (url "https://github.com/ekg/filevercmp")
(commit commit)))
(file-name (git-file-name name commit))
(sha256
@@ -9234,7 +9234,7 @@ common bioinformatics tools.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/vatlab/varianttools.git")
+ (url "https://github.com/vatlab/varianttools")
;; There is no tag corresponding to version 3.1.2
(commit "813ae4a90d25b69abc8a40f4f70441fe09015249")))
(file-name (git-file-name name version))
@@ -11134,7 +11134,7 @@ Maximum Parsimony, distance methods and Hadamard conjugation.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/rajewsky-lab/dropbead.git")
+ (url "https://github.com/rajewsky-lab/dropbead")
(commit commit)))
(file-name (git-file-name name version))
(sha256
@@ -11164,7 +11164,7 @@ droplet sequencing. It has been particularly tailored for Drop-seq.")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/lomereiter/htslib.git")
+ (url "https://github.com/lomereiter/htslib")
(commit commit)))
(file-name (string-append "htslib-" version "-checkout"))
(sha256
@@ -11183,7 +11183,7 @@ droplet sequencing. It has been particularly tailored for Drop-seq.")
(origin
(method git-fetch)
(uri (git-reference
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@@ -11232,7 +11232,7 @@ droplet sequencing. It has been particularly tailored for Drop-seq.")
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(uri (git-reference
- (url "https://github.com/biod/BioD.git")
+ (url "https://github.com/biod/BioD")
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(string-take commit 9)
@@ -11259,7 +11259,7 @@ sort, markdup, and depth.")
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@@ -11305,7 +11305,7 @@ with narrow binding events such as transcription factor ChIP-seq.")
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@@ -11520,7 +11520,7 @@ applications for tackling some common problems in a user-friendly way.")
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@@ -11582,7 +11582,7 @@ models. TADbit is complemented by TADkit for visualizing 3D models.")
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@@ -11908,7 +11908,7 @@ using nucleotide or amino-acid sequence data.")
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@@ -11957,7 +11957,7 @@ accurate as existing quantification tools.")
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@@ -11980,7 +11980,7 @@ dependency like SeqAn.")
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@@ -12095,7 +12095,7 @@ dependency like SeqAn.")
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@@ -12171,7 +12171,7 @@ The following file formats are supported:
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("rapmap" ,(origin
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@@ -13200,7 +13200,7 @@ HTML reports with interesting findings about your samples.")
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(uri (git-reference
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@@ -13235,7 +13235,7 @@ enrichment.")
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@@ -13302,7 +13302,7 @@ rate speciation and extinction.")
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@@ -13447,7 +13447,7 @@ Thus the per-base error rate is similar to the raw input reads.")
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@@ -13493,7 +13493,7 @@ can be calculated, and a number of descriptive plots easily generated.")
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@@ -13527,7 +13527,7 @@ can be calculated, and a number of descriptive plots easily generated.")
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@@ -13554,7 +13554,7 @@ conversions, region filtering, FASTA sequence extraction and more.")
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@@ -13834,7 +13834,7 @@ bound.")
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@@ -13933,7 +13933,7 @@ such as Hi-C contact matrices.")
;; Version 12 is not available on pypi.
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@@ -13973,7 +13973,7 @@ the HiCExplorer and pyGenomeTracks packages.")
;; The latest version is not available on Pypi.
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@@ -14234,7 +14234,7 @@ and intra-cell population structure.\" Baron et al. Cell Systems (2016)
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@@ -14265,7 +14265,7 @@ Barcoding Kit or Rapid Barcoding Kit.")
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@@ -14661,7 +14661,7 @@ polymorphisms) and indels with respect to a reference genome and more.")
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@@ -14999,7 +14999,7 @@ sequence for paired-ended data, for which this information is not available.")
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